View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_21 (Length: 268)
Name: NF19414_low_21
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 38309101 - 38309352
Alignment:
| Q |
18 |
ataacagtaaacaattccataggacgttcttaatatgacatcagtttnnnnnnn-ttggcaatttcccttctaacaaatgagatgtttctaatctttccc |
116 |
Q |
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| T |
38309101 |
ataacagtaaacaattccataggacgttcttaatatgacatcagcttaaaaaaaattggcaatttcccttctaacaaatgagatgtttctaatctttccc |
38309200 |
T |
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| Q |
117 |
ctgcaaataacgaaataaatccaggattggaggctggaactcggccaaatcaatacaaaagtgcctttgtaagtagcatcacttgaaaaggggttggggg |
216 |
Q |
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| T |
38309201 |
ctgcaaataacgaaataaatccaggattggagactggaactcggccaaatcaatacaaaagtgcctttgtaagtagcatcacttgaaaaggggttggggg |
38309300 |
T |
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| Q |
217 |
ataatattaagcacgtggaaaactctaatggtaccagtgccaagaatatgga |
268 |
Q |
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| T |
38309301 |
ataatattaagcacgtggaaaactctaatggtaccagtgccaagaatatgga |
38309352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 76 - 260
Target Start/End: Complemental strand, 38129161 - 38128976
Alignment:
| Q |
76 |
caatttcccttctaacaaatgagatgtttctaatctttcccctgcaaataa--cgaaataaatccaggattggaggctggaactcggccaaatcaataca |
173 |
Q |
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| T |
38129161 |
caatttcccttctaacaaatgagatgtatcttatctttcccctgcaaatgatgcataataaatccaggattggagactggaactcggccaaatc-ataca |
38129063 |
T |
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| Q |
174 |
aaagtgcctttgtaagtagcatcacttgaaa-aggggttgggggataatattaagcacgtggaaaactctaatggtaccagtgccaag |
260 |
Q |
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| T |
38129062 |
aaggtacctttgtaagtagcatcacttaaaagaggggttcggggataatatt-agtacgtgtaaaactataatggcaccggtgccaag |
38128976 |
T |
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