View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_22 (Length: 266)
Name: NF19414_low_22
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_22 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 15755082 - 15754912
Alignment:
| Q |
16 |
caaagaagttacgatgatatttatacaattatggtaaatgcaaataaccaacataactaactaagaagaagagtgtacaattactaaaaggccctctatg |
115 |
Q |
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| T |
15755082 |
caaagaagttacaatggtatttatacaattatggtaaatgcaaataaccaacataactaactaagaagaagagtgtacaattactaaaaggccctccatg |
15754983 |
T |
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| Q |
116 |
tagtttgcttgtggtgcaagttatcttc--tggtacttgtaatatctgttttatcttctatgttcaataaa |
184 |
Q |
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| T |
15754982 |
tagtttgcttgtgctgcaagttatcttctatggtacttgtaatatctgttttatcctctatgttcaataaa |
15754912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 15761015 - 15760847
Alignment:
| Q |
16 |
caaagaagttacgatgatatttatacaattatggtaaatgcaaataaccaacataactaactaagaagaagagtgtacaattactaaaaggccctctatg |
115 |
Q |
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| T |
15761015 |
caaagaagttataatggtatttatacaattctggtaaatgcaaataaccaacataactaactaagaagaagagcgtacaattactaaaaggccttctatg |
15760916 |
T |
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| Q |
116 |
tagtttgcttgtggtgcaagttatcttc--tggtacttgtaatatctgttttatcttctatgttcaata |
182 |
Q |
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| T |
15760915 |
tagtttgcttgtaccgcaagttatcttctatggtacttgtaatatttgttttatcttctatgttcaata |
15760847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 6422 - 6532
Alignment:
| Q |
69 |
taactaactaagaagaagagtgtacaattactaaaaggccctctatgtagtttgcttgtggtgcaagttatcttc--tggtacttgtaatatctgtttta |
166 |
Q |
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||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||| | |||||||| |
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| T |
6422 |
taactaactaagaagaagaatgtacaaatactaaaatgccctctatgtagcttgcttgtgctgcaagttatcttctatggtacttgtattgtctgttttg |
6521 |
T |
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| Q |
167 |
tcttctatgtt |
177 |
Q |
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|||||||||| |
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| T |
6522 |
acttctatgtt |
6532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 16769811 - 16769870
Alignment:
| Q |
16 |
caaagaagttacgatgatatttatacaattatggtaaatgcaaataaccaacataactaa |
75 |
Q |
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| T |
16769811 |
caaagaagttacaatgatatttatacaattatggtaaatgcaaataaccaacataactaa |
16769870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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