View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19414_low_25 (Length: 249)

Name: NF19414_low_25
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19414_low_25
NF19414_low_25
[»] chr8 (30 HSPs)
chr8 (1-226)||(43844459-43844699)
chr8 (12-135)||(5033175-5033300)
chr8 (7-127)||(5667119-5667241)
chr8 (12-135)||(33841590-33841715)
chr8 (12-135)||(35440968-35441093)
chr8 (3-126)||(45191117-45191242)
chr8 (9-123)||(6296631-6296747)
chr8 (16-122)||(8796449-8796557)
chr8 (17-135)||(10086771-10086891)
chr8 (52-135)||(8243427-8243512)
chr8 (41-135)||(34229655-34229751)
chr8 (87-135)||(5033237-5033285)
chr8 (87-135)||(35440983-35441031)
chr8 (79-135)||(2581839-2581895)
chr8 (87-135)||(10086833-10086881)
chr8 (87-135)||(33841605-33841653)
chr8 (87-124)||(35031639-35031676)
chr8 (87-122)||(8243415-8243450)
chr8 (12-75)||(8796421-8796484)
chr8 (87-126)||(8796498-8796537)
chr8 (16-75)||(34229644-34229703)
chr8 (67-123)||(39850981-39851039)
chr8 (12-74)||(5667096-5667158)
chr8 (16-126)||(4958622-4958733)
chr8 (88-125)||(39139838-39139875)
chr8 (7-75)||(8243464-8243532)
chr8 (7-75)||(22649839-22649907)
chr8 (87-123)||(34229717-34229753)
chr8 (7-75)||(35441045-35441113)
chr8 (90-126)||(45191150-45191186)
[»] chr5 (37 HSPs)
chr5 (12-137)||(29699379-29699506)
chr5 (9-123)||(28818943-28819059)
chr5 (6-127)||(12913825-12913948)
chr5 (12-135)||(291111-291236)
chr5 (12-123)||(16971170-16971283)
chr5 (12-135)||(19655172-19655297)
chr5 (52-126)||(16439161-16439237)
chr5 (12-123)||(2093936-2094049)
chr5 (12-123)||(3899865-3899978)
chr5 (12-100)||(2953239-2953329)
chr5 (16-123)||(26662425-26662535)
chr5 (16-123)||(26934020-26934130)
chr5 (52-127)||(3180099-3180176)
chr5 (1-127)||(30117816-30117944)
chr5 (87-135)||(291173-291221)
chr5 (87-135)||(3899915-3899963)
chr5 (87-135)||(16971220-16971268)
chr5 (67-127)||(19598354-19598416)
chr5 (52-111)||(38134412-38134473)
chr5 (16-125)||(2356298-2356406)
chr5 (87-144)||(7009404-7009461)
chr5 (10-86)||(228415-228491)
chr5 (87-135)||(2093951-2093999)
chr5 (87-135)||(2953266-2953314)
chr5 (87-123)||(16439214-16439250)
chr5 (86-146)||(17849220-17849280)
chr5 (92-135)||(32485630-32485673)
chr5 (49-122)||(2935866-2935941)
chr5 (87-135)||(12913879-12913927)
chr5 (92-132)||(13312281-13312321)
chr5 (87-127)||(19655234-19655274)
chr5 (87-135)||(29699443-29699491)
chr5 (87-126)||(28818993-28819032)
chr5 (93-135)||(30117842-30117884)
chr5 (15-64)||(13312266-13312315)
chr5 (67-133)||(39031205-39031273)
chr5 (87-123)||(3180086-3180122)
[»] chr4 (42 HSPs)
chr4 (10-137)||(47661854-47661983)
chr4 (12-135)||(6271716-6271841)
chr4 (12-123)||(42375036-42375149)
chr4 (10-135)||(23444266-23444393)
chr4 (41-127)||(26186044-26186130)
chr4 (12-135)||(51265459-51265584)
chr4 (41-122)||(55090024-55090107)
chr4 (16-123)||(53954636-53954745)
chr4 (16-126)||(35682189-35682301)
chr4 (41-123)||(47404613-47404697)
chr4 (52-125)||(40789203-40789278)
chr4 (87-135)||(42375086-42375134)
chr4 (87-135)||(23444283-23444331)
chr4 (87-135)||(47661918-47661966)
chr4 (67-126)||(30861828-30861889)
chr4 (87-144)||(25818378-25818435)
chr4 (32-122)||(47762635-47762727)
chr4 (87-135)||(51265521-51265569)
chr4 (84-135)||(3862619-3862670)
chr4 (84-135)||(3871376-3871427)
chr4 (52-144)||(50384144-50384230)
chr4 (52-111)||(52028587-52028648)
chr4 (30-100)||(25818390-25818462)
chr4 (87-132)||(35682242-35682287)
chr4 (7-75)||(6271696-6271764)
chr4 (7-75)||(23444345-23444413)
chr4 (87-123)||(26186042-26186078)
chr4 (12-64)||(35682165-35682217)
chr4 (87-123)||(47404611-47404647)
chr4 (87-135)||(53954686-53954734)
chr4 (87-126)||(6271778-6271817)
chr4 (78-137)||(31532756-31532815)
chr4 (87-122)||(55090023-55090058)
chr4 (90-123)||(31430487-31430520)
chr4 (87-144)||(47762684-47762741)
chr4 (12-64)||(5048887-5048939)
chr4 (12-64)||(30709987-30710039)
chr4 (7-75)||(30861850-30861918)
chr4 (7-39)||(38714826-38714858)
chr4 (87-123)||(50384131-50384167)
chr4 (7-75)||(51265439-51265507)
chr4 (87-123)||(52028625-52028661)
[»] chr1 (50 HSPs)
chr1 (12-135)||(48993916-48994041)
chr1 (12-121)||(33219601-33219712)
chr1 (12-123)||(49444912-49445023)
chr1 (12-135)||(29179596-29179721)
chr1 (20-127)||(32540755-32540864)
chr1 (10-123)||(15220837-15220952)
chr1 (41-135)||(4609010-4609106)
chr1 (1-127)||(5995391-5995519)
chr1 (78-135)||(21630056-21630113)
chr1 (39-121)||(46333972-46334056)
chr1 (42-135)||(45728301-45728396)
chr1 (52-132)||(17127603-17127685)
chr1 (52-132)||(37155063-37155145)
chr1 (52-111)||(38674544-38674603)
chr1 (52-123)||(741541-741614)
chr1 (52-135)||(1091583-1091668)
chr1 (52-135)||(9157324-9157409)
chr1 (78-127)||(28395659-28395708)
chr1 (52-123)||(29371394-29371467)
chr1 (41-123)||(8337879-8337963)
chr1 (87-135)||(48993931-48993979)
chr1 (67-135)||(36290461-36290531)
chr1 (67-135)||(44706838-44706908)
chr1 (41-123)||(47303421-47303505)
chr1 (87-123)||(1819515-1819551)
chr1 (87-135)||(29179611-29179659)
chr1 (87-127)||(33219649-33219689)
chr1 (7-75)||(37155040-37155108)
chr1 (87-135)||(49444927-49444975)
chr1 (52-123)||(34062235-34062308)
chr1 (52-135)||(48498429-48498514)
chr1 (87-132)||(17127581-17127626)
chr1 (87-132)||(29371444-29371489)
chr1 (87-123)||(4609072-4609108)
chr1 (87-127)||(5995445-5995485)
chr1 (87-135)||(32540762-32540810)
chr1 (67-123)||(5694943-5695001)
chr1 (87-125)||(8337875-8337913)
chr1 (52-106)||(19711219-19711273)
chr1 (7-61)||(44706874-44706928)
chr1 (85-135)||(46932011-46932061)
chr1 (88-125)||(32157602-32157639)
chr1 (87-123)||(741528-741564)
chr1 (89-121)||(9157388-9157420)
chr1 (87-135)||(15220887-15220935)
chr1 (7-75)||(29179673-29179741)
chr1 (87-123)||(34062285-34062321)
chr1 (95-123)||(36774836-36774864)
chr1 (87-123)||(47303471-47303507)
chr1 (41-122)||(48604975-48605058)
[»] scaffold0586 (2 HSPs)
scaffold0586 (16-132)||(7050-7168)
scaffold0586 (87-135)||(7061-7109)
[»] chr6 (15 HSPs)
chr6 (16-127)||(17750924-17751037)
chr6 (10-126)||(13043480-13043598)
chr6 (16-123)||(24618604-24618713)
chr6 (19-123)||(12343126-12343232)
chr6 (54-135)||(24587475-24587558)
chr6 (52-122)||(10521888-10521960)
chr6 (41-126)||(551193-551280)
chr6 (90-135)||(24618615-24618660)
chr6 (78-123)||(31654331-31654376)
chr6 (87-123)||(2315330-2315366)
chr6 (87-135)||(12343176-12343224)
chr6 (87-127)||(24975774-24975814)
chr6 (7-76)||(24975746-24975815)
chr6 (7-75)||(551241-551309)
chr6 (15-75)||(24587463-24587523)
[»] chr2 (30 HSPs)
chr2 (15-111)||(14229355-14229453)
chr2 (12-145)||(6721955-6722090)
chr2 (12-135)||(16514438-16514563)
chr2 (12-123)||(38933613-38933726)
chr2 (12-123)||(6217223-6217336)
chr2 (52-137)||(15011292-15011379)
chr2 (23-123)||(29925580-29925682)
chr2 (52-126)||(37762040-37762116)
chr2 (15-135)||(29508692-29508815)
chr2 (39-123)||(2893989-2894075)
chr2 (3-123)||(37961732-37961854)
chr2 (52-123)||(2828610-2828683)
chr2 (16-111)||(14470595-14470692)
chr2 (87-132)||(14229370-14229415)
chr2 (87-135)||(16514500-16514548)
chr2 (87-135)||(33018621-33018669)
chr2 (16-127)||(24115942-24116055)
chr2 (68-145)||(1945461-1945540)
chr2 (87-135)||(6217238-6217286)
chr2 (87-135)||(14470606-14470654)
chr2 (12-84)||(32545855-32545927)
chr2 (80-135)||(9173050-9173105)
chr2 (7-61)||(29508781-29508835)
chr2 (94-127)||(14892343-14892376)
chr2 (87-135)||(29508704-29508753)
chr2 (38-127)||(8534168-8534259)
chr2 (10-111)||(14892299-14892401)
chr2 (87-135)||(24115996-24116044)
chr2 (7-47)||(37632985-37633025)
chr2 (87-135)||(38933663-38933711)
[»] scaffold0016 (2 HSPs)
scaffold0016 (12-123)||(49702-49815)
scaffold0016 (87-135)||(49717-49765)
[»] chr7 (30 HSPs)
chr7 (12-135)||(11016883-11017008)
chr7 (15-135)||(38975819-38975941)
chr7 (12-135)||(4290559-4290684)
chr7 (12-123)||(42628321-42628434)
chr7 (52-135)||(34854734-34854819)
chr7 (52-135)||(41018267-41018352)
chr7 (41-123)||(4649346-4649432)
chr7 (52-125)||(27028832-27028907)
chr7 (52-127)||(15027564-15027641)
chr7 (67-144)||(22764754-22764833)
chr7 (87-135)||(48000708-48000756)
chr7 (41-123)||(7671939-7672023)
chr7 (82-127)||(27028750-27028795)
chr7 (78-135)||(45231917-45231974)
chr7 (87-135)||(11016945-11016993)
chr7 (87-127)||(15027618-15027658)
chr7 (7-84)||(48000688-48000765)
chr7 (1-111)||(48000775-48000887)
chr7 (87-135)||(4290621-4290669)
chr7 (67-123)||(29053368-29053426)
chr7 (7-61)||(4290539-4290593)
chr7 (87-125)||(4649398-4649436)
chr7 (7-61)||(34854785-34854839)
chr7 (93-135)||(48000819-48000861)
chr7 (87-132)||(38975881-38975926)
chr7 (28-84)||(6225540-6225596)
chr7 (53-122)||(10419485-10419556)
chr7 (7-75)||(11016863-11016931)
chr7 (7-75)||(38975799-38975867)
chr7 (87-135)||(42628371-42628419)
[»] chr3 (31 HSPs)
chr3 (1-135)||(41752978-41753114)
chr3 (12-121)||(50524730-50524841)
chr3 (16-132)||(30734405-30734523)
chr3 (3-123)||(1801436-1801558)
chr3 (52-135)||(33689190-33689275)
chr3 (52-135)||(43139748-43139833)
chr3 (52-122)||(30476513-30476585)
chr3 (53-123)||(47677295-47677367)
chr3 (1-127)||(51046061-51046189)
chr3 (30-135)||(47492064-47492171)
chr3 (39-135)||(18321665-18321763)
chr3 (87-135)||(45103123-45103171)
chr3 (71-135)||(30580814-30580880)
chr3 (52-123)||(29031753-29031826)
chr3 (52-126)||(50549998-50550074)
chr3 (12-84)||(45103108-45103180)
chr3 (87-135)||(47492061-47492109)
chr3 (69-132)||(39057015-39057078)
chr3 (87-135)||(1801460-1801508)
chr3 (16-75)||(33689179-33689238)
chr3 (87-126)||(51046096-51046135)
chr3 (10-126)||(21024092-21024209)
chr3 (87-125)||(47677279-47677317)
chr3 (19-64)||(18321657-18321702)
chr3 (87-132)||(30734419-30734464)
chr3 (87-123)||(29031740-29031776)
chr3 (87-123)||(30476500-30476536)
chr3 (12-64)||(30734489-30734541)
chr3 (87-123)||(33689252-33689288)
chr3 (87-127)||(41753040-41753080)
chr3 (7-47)||(43139813-43139853)
[»] scaffold0161 (1 HSPs)
scaffold0161 (12-135)||(27219-27344)
[»] scaffold0047 (2 HSPs)
scaffold0047 (52-123)||(63783-63856)
scaffold0047 (87-123)||(63833-63869)
[»] scaffold0180 (2 HSPs)
scaffold0180 (87-135)||(19136-19184)
scaffold0180 (10-96)||(19119-19207)
[»] scaffold1033 (2 HSPs)
scaffold1033 (87-120)||(2289-2322)
scaffold1033 (52-97)||(2265-2312)
[»] scaffold1029 (2 HSPs)
scaffold1029 (87-120)||(2289-2322)
scaffold1029 (52-97)||(2265-2312)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 43844459 - 43844699
Alignment:
Q  1 acgggtaatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagagaaacacaagcattgtga 100  Q
    |||||||| |||||| |||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  43844459 acgggtaacatttggatgacatagagttgggtgatattgatgatattggttaatcataatgtcaggatgcttgtgagagagagaaacacaagcattgtga 43844558  T
Q  101 cattgtgattgatcaatgtcacca---------------atgccacccaagtgctatccgaaaaggaccatgtttcatgttttgtcatcatctttgtatt 185  Q
    ||||||||||||||||| ||||||               ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43844559 cattgtgattgatcaatatcaccaatgtcatccaactctatgtcacccaattgctatccgaaaaggaccatgtttcatgttttgtcatcatctttgtatt 43844658  T
Q  186 tatggcaaaaacaatactccctccgtcccattttaattgag 226  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43844659 tatggcaaaaacaatactccctccgtcccattttaattgag 43844699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 5033300 - 5033175
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||| |||||||    |||||||||||||  ||||||||||||||||||  ||||||||||||||| |||||||||    
T  5033300 ttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 5033201  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    || ||||||||||||||| |||||||    
T  5033200 tggtcaatgtcaccaatgtcacccaa 5033175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 5667241 - 5667119
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacatt 104  Q
    |||| ||||||||||||||||||| ||| |||| ||||||| |  ||| |||||||||  ||||||||||||||||||  || |||||||||||||||||    
T  5667241 aatacttgggtgacatagagtttgatgacattggtgacattggccaattacaatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacatt 5667142  T
Q  105 gtgattgatcaatgtcaccaatg 127  Q
    |||||||| ||||||||||||||    
T  5667141 gtgattgaccaatgtcaccaatg 5667119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 33841590 - 33841715
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||| |||||||    ||||||| |||||  |||||||||||||||  |||||||||||||||||| |||| ||||    
T  33841590 ttgggtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgat 33841689  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    || ||||||||||||||| |||||||    
T  33841690 tggtcaatgtcaccaatgtcacccaa 33841715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 35440968 - 35441093
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgat 109  Q
    ||||||||| ||||||| ||||| |||| |||||||    |||||||||||||  |||||||||||||||  |||||||||||||||||| |||||||||    
T  35440968 ttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 35441067  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    ||  |||||||||||||| |||||||    
T  35441068 tggccaatgtcaccaatgtcacccaa 35441093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 45191117 - 45191242
Alignment:
Q  3 gggtaatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaa--agagagaaacacaagcattgtga 100  Q
    |||||| | ||||||||||||||||| | |||||||| |||||||  |||||||||||| ||  |||||| ||||  |||||||||||||| |||||| |    
T  45191117 gggtaacacttgggtgacatagagttggatgatattggtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaa 45191216  T
Q  101 cattgtgattgatcaatgtcaccaat 126  Q
    |||| |||||| ||||||||||||||    
T  45191217 cattttgattggtcaatgtcaccaat 45191242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 6296747 - 6296631
Alignment:
Q  9 tatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgt 106  Q
    ||||||||||| |||||||| | ||| |||  |||||||||| ||| | |||||||  || |||||||||||||||  |||||||||||| |||||||||    
T  6296747 tatttgggtgatatagagttggatgacattagtgacattagtcaattataatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgt 6296648  T
Q  107 gattgatcaatgtcacc 123  Q
    ||||| |||||||||||    
T  6296647 gattggtcaatgtcacc 6296631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 8796557 - 8796449
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtgattgat 113  Q
    ||||||||||| | |||||||||| |||||||    ||||| |||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||     
T  8796557 gtgacatagagctaggtgatattggtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgattgac 8796458  T
Q  114 caatgtcac 122  Q
    |||| ||||    
T  8796457 caatatcac 8796449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 10086891 - 10086771
Alignment:
Q  17 tgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatc 114  Q
    |||||||||||| ||||| |||| |||||||    |||||||||||||  ||| ||||||||||||||  ||||||| |||| ||||||||||||||| |    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgacc 10086792  T
Q  115 aatgtcaccaatgccacccaa 135  Q
    |||||||| |||| |||||||    
T  10086791 aatgtcactaatgtcacccaa 10086771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 8243427 - 8243512
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||| ||  |||||||||||||||  |||||||||||||||||| |||||||||||| ||| |||||||||| |||||||    
T  8243427 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaa 8243512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 34229751 - 34229655
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||| || ||||||||| |||  ||||||||||||||||||  |||||||||||| |||||||||||||||   ||||||| |||| |||||||    
T  34229751 tgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattgactcatgtcactaatgtcacccaa 34229655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 5033237 - 5033285
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  5033237 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 5033285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 35441031 - 35440983
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  35441031 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 35440983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 2581895 - 2581839
Alignment:
Q  79 gagagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||| |||||||||||  |||||||| ||||| |||||||    
T  2581895 gagagaaacacaagcattgtggcattgtgattggccaatgtcaacaatgtcacccaa 2581839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 10086833 - 10086881
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  10086833 cacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 10086881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 33841653 - 33841605
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  33841653 cacaagcattgtgacaatgtgattggtcaatgtcaccaatgtcacccaa 33841605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 35031676 - 35031639
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacca 124  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  35031676 cacaagcattgcgacattgtgattgatcaatgtcacca 35031639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 8243450 - 8243415
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcac 122  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8243450 cacaagcattgtggcattgtgattgatcaatgtcac 8243415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 8796421 - 8796484
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    ||||||||||||||||| |||||||||  ||| ||| || |||||||||||||  |||||||||    
T  8796421 ttgggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtg 8796484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 8796498 - 8796537
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaat 126  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  8796498 cacaagcattgtgacattttgattggtcaatgtcaccaat 8796537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 34229644 - 34229703
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    ||||||||||||| ||||| |||  |||||| ||| |||||||||||||| |||||||||    
T  34229644 gtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtg 34229703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 39851039 - 39850981
Alignment:
Q  67 atgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||||||||||||||||  ||||||| ||||||| |||||||||||  ||||||||||    
T  39851039 atgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 39850981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 5667096 - 5667158
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgt 74  Q
    ||||||||||||||||| | ||| |||| ||||||| || |||||||||||||  ||||||||    
T  5667096 ttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgt 5667158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 4958733 - 4958622
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgat 113  Q
    ||||||||||||| | |||||||  |||||||    |||||||| ||||  || |||||||||||||||  ||||||| |||| ||||||||||||||      
T  4958733 gtgacatagagttagatgatattagtgacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggc 4958635  T
Q  114 caatgtcaccaat 126  Q
    |||||||| ||||    
T  4958634 caatgtcatcaat 4958622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 39139838 - 39139875
Alignment:
Q  88 acaagcattgtgacattgtgattgatcaatgtcaccaa 125  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  39139838 acaaggattgtgacattgtgattgaccaatgtcaccaa 39139875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 8243532 - 8243464
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||| ||||||||||||||||| ||||| |||| |||| || || |||||||||| ||  |||||||||    
T  8243532 aatacttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtg 8243464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 22649839 - 22649907
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||| |||||||||||||||||  |||| |||| ||||||| | ||||||||||| ||  |||||||||    
T  22649839 aatacttgggtgacatagagttgagtgacattggtgacattggctaatcacaatgccacaatgcttgtg 22649907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 34229717 - 34229753
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  34229717 cacaagcattgtgatattgtgattgaccaatgtcacc 34229753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 35441113 - 35441045
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||| ||||||||||||||||| ||||| |||| ||||||| |  |||||||||| ||  |||||||||    
T  35441113 aatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 35441045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 45191186 - 45191150
Alignment:
Q  90 aagcattgtgacattgtgattgatcaatgtcaccaat 126  Q
    |||||||||| |||||||||| |||||||||||||||    
T  45191186 aagcattgtggcattgtgattaatcaatgtcaccaat 45191150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 29699506 - 29699379
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| |||||||||| ||||||| |  |||||||||||||  ||||||||||||||  ||||||||||||||||||| |||||||||    
T  29699506 ttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 29699407  T
Q  110 tgatcaatgtcaccaatgccacccaagt 137  Q
    ||  |||||||||||||| |||||||||    
T  29699406 tggccaatgtcaccaatgtcacccaagt 29699379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 28819059 - 28818943
Alignment:
Q  9 tatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgt 106  Q
    ||||||||||||||||||||  ||||||||| ||||||| || ||||| |||||||  ||||||||||||||  |||||| ||||| |||||||||||||    
T  28819059 tatttgggtgacatagagttgagtgatattggtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgt 28818960  T
Q  107 gattgatcaatgtcacc 123  Q
    |||||| ||||||||||    
T  28818959 gattgaccaatgtcacc 28818943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 12913948 - 12913825
Alignment:
Q  6 taatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacat 103  Q
    ||||||||| ||||||||||||| ||||| |||| ||| ||| || |||||||||||||  ||||||||||||||  |||| ||||||| ||||||||||    
T  12913948 taatatttgtgtgacatagagttgggtgacattggtgatattggtcaatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacat 12913849  T
Q  104 tgtgattgatcaatgtcaccaatg 127  Q
    ||||||||  ||||||||||||||    
T  12913848 tgtgattggccaatgtcaccaatg 12913825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 291236 - 291111
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagaga--gaaacacaagcattgtgacattgtgat 109  Q
    |||||||| |||||||| ||||| |||| |||||||  | |||||||||||||  ||| ||||||||||||  |||| |||||||||||| |||||||||    
T  291236 ttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgat 291137  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    ||  |||||||||||||| |||||||    
T  291136 tggccaatgtcaccaatgtcacccaa 291111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 16971283 - 16971170
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||| |||||||    |||||||||||||  ||||||||||||||||||  ||||||||||||||| |||||||||    
T  16971283 ttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 16971184  T
Q  110 tgatcaatgtcacc 123  Q
    ||  ||||||||||    
T  16971183 tggccaatgtcacc 16971170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 19655297 - 19655172
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    |||||||||||||||||  |||| |||| |||||||    |||||||||||||  ||||||||||||||||||  ||||||| ||||||| |||||||||    
T  19655297 ttgggtgacatagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgat 19655198  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    ||  |||||||||||||| |||||||    
T  19655197 tggccaatgtcaccaatgtcacccaa 19655172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 16439237 - 16439161
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaat 126  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  16439237 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcaccaat 16439161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 2093936 - 2094049
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaa--agagagaaacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| |||||||||| |||||||  | |||||||||||||  |||||||||||  ||||||||||||||||||| ||| | ||||||    
T  2093936 ttgggtgacatagagttgggtgatattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattatgatagtgtgat 2094035  T
Q  110 tgatcaatgtcacc 123  Q
    |  ||||| |||||    
T  2094036 tagtcaatatcacc 2094049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 3899978 - 3899865
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    ||||||||| ||||||| ||||| |||| |||||||    |||||||||||||  ||||||||||||||||||  ||||||||||||||| |||||||||    
T  3899978 ttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 3899879  T
Q  110 tgatcaatgtcacc 123  Q
    ||  ||||||||||    
T  3899878 tggccaatgtcacc 3899865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 2953329 - 2953239
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtga 100  Q
    ||||||||||||||||| ||||| |||| ||||||| |  |||||||||||||  ||||||||||||||  ||||||||||||||||||||    
T  2953329 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtga 2953239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 26662535 - 26662425
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaa-tcacaatgtcaggatgcttgtgaaa--gagagaaacacaagcattgtgacattgtgattga 112  Q
    ||||| ||||||| |||||||||| ||||||| || || |||||||||||  || |||||||||  |||||||||||||||| ||| ||||||||||||     
T  26662535 gtgacttagagttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattgg 26662436  T
Q  113 tcaatgtcacc 123  Q
    |||||||||||    
T  26662435 tcaatgtcacc 26662425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 26934130 - 26934020
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaa-tcacaatgtcaggatgcttgtgaaa--gagagaaacacaagcattgtgacattgtgattga 112  Q
    ||||| ||||||| |||||||||| ||||||| || || |||||||||||  || |||||||||  |||||||||||||||| ||| ||||||||||||     
T  26934130 gtgacttagagttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattgg 26934031  T
Q  113 tcaatgtcacc 123  Q
    |||||||||||    
T  26934030 tcaatgtcacc 26934020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 3180099 - 3180176
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    ||||| |||||||  ||| |||||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||    
T  3180099 aatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcaccaatg 3180176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 30117816 - 30117944
Alignment:
Q  1 acgggtaatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaa--gagagaaacacaagcattgt 98  Q
    |||||||  |||||||||| |||||||| ||||| |||| ||| |||    |||||||||||||  ||| || |||||  ||||||||||||||||||||    
T  30117816 acgggtagcatttgggtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatgtttatgaaaaagagagaaacacaagcattgt 30117915  T
Q  99 gacattgtgattgatcaatgtcaccaatg 127  Q
    | |||| ||||||| |||| |||||||||    
T  30117916 ggcattatgattgaccaatatcaccaatg 30117944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 291173 - 291221
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  291173 cacaaacattgtgacattgtgattgatcaatgtcaccaatgtcacccaa 291221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 3899915 - 3899963
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  3899915 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 3899963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 16971220 - 16971268
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  16971220 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 16971268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 19598416 - 19598354
Alignment:
Q  67 atgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    ||||||||||||||||||  |||||||||||||||  ||||||||||| ||||||||||||||    
T  19598416 atgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtcaccaatg 19598354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 38134412 - 38134473
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagaga--gaaacacaagcattgtgacattgtgattg 111  Q
    |||||||||||||  ||||| ||||||||||  |||||||||||||||||||||||||||||    
T  38134412 aatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattg 38134473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 2356406 - 2356298
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagagaaacacaagcattgtgacattgtgattgatca 115  Q
    ||||||||||||| | ||| |||| ||||||| |  ||||||| |||||  |||||| ||||||||||||||||||||||| | ||||||| ||||   |    
T  2356406 gtgacatagagttggatgacattggtgacattggccaatcaca-tgtcacaatgcttatgaaagagagaaacacaagcattataacattgtaattgccta 2356308  T
Q  116 atgtcaccaa 125  Q
    ||||||||||    
T  2356307 atgtcaccaa 2356298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 7009404 - 7009461
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaagtgctatcc 144  Q
    |||||||||||||| ||||||||||| |||| ||||||||| || |||||||||||||    
T  7009404 cacaagcattgtgatattgtgattgaccaatatcaccaatgtcatccaagtgctatcc 7009461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 228491 - 228415
Alignment:
Q  10 atttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagagaaa 86  Q
    |||||| ||||||| |||| ||| |||||||||| ||| || |||||||||||||  |||||||| |||||||||||    
T  228491 atttggatgacataaagttgggtaatattgatgagatttgtcaatcacaatgtcaaaatgcttgtaaaagagagaaa 228415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 2093999 - 2093951
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||||    
T  2093999 cacaagcattatgacattgtgattgatcaatgtcaccaatatcacccaa 2093951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 2953266 - 2953314
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||||||||||  |||||||||||||| |||||||    
T  2953266 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaa 2953314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 16439214 - 16439250
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||||||||||||||    
T  16439214 cacaagcattgtgacattgtgattgatcaatgtcacc 16439250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 17849220 - 17849280
Alignment:
Q  86 acacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaagtgctatccga 146  Q
    |||||||||||| || ||||||||||| |||||||||||||  ||||||||||||| ||||    
T  17849220 acacaagcattgcgatattgtgattgaccaatgtcaccaatatcacccaagtgctacccga 17849280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 32485630 - 32485673
Alignment:
Q  92 gcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  32485630 gcattgtgatattgtgattgatcaatgtcaccaatgtcacccaa 32485673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 2935866 - 2935941
Alignment:
Q  49 gttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtgattgatcaatgtcac 122  Q
    ||||||||||||||||  ||| |||| |||||  ||||||||||| ||||||||||||||| ||| ||||| ||||    
T  2935866 gttaatcacaatgtcataatgtttgtaaaagatagagaaacacaaacattgtgacattgtggttgttcaatatcac 2935941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 12913879 - 12913927
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||| ||||||||||||||| |||| ||||||||| |||||||    
T  12913879 cacaagcattatgacattgtgattgaccaatatcaccaatgtcacccaa 12913927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 13312321 - 13312281
Alignment:
Q  92 gcattgtgacattgtgattgatcaatgtcaccaatgccacc 132  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  13312321 gcattgtgacattgtgattgatcaatgtcatcaatgtcacc 13312281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 19655234 - 19655274
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  19655234 cacaagcattgtgacattgtgattggacaatgtcaccaatg 19655274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 29699443 - 29699491
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||||||||||  |||||||||||||  |||||||    
T  29699443 cacaagcattgtgacattgtgattggccaatgtcaccaatatcacccaa 29699491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 28818993 - 28819032
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaat 126  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  28818993 cacaagcattgtgacattatgattgaccaatgtcaccaat 28819032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 30117884 - 30117842
Alignment:
Q  93 cattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||| ||||| ||||||||| |||||||    
T  30117884 cattgtgacattgtgattggtcaatatcaccaatgtcacccaa 30117842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 13312266 - 13312315
Alignment:
Q  15 ggtgacatagagtttggtgatattgatgacattagttaatcacaatgtca 64  Q
    |||||||||||||| ||||| ||||||||||||  | |||||||||||||    
T  13312266 ggtgacatagagttaggtgacattgatgacattgatcaatcacaatgtca 13312315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 39031205 - 39031273
Alignment:
Q  67 atgcttgtgaaaga--gagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccaccc 133  Q
    ||||||||||||||  |||||| ||||  ||| ||| |||||||||||||| ||||||||||| |||||    
T  39031205 atgcttgtgaaagaaagagaaatacaaatattatgatattgtgattgatcagtgtcaccaatgtcaccc 39031273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 3180122 - 3180086
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  3180122 cacaaacattgtgacattatgattgatcaatgtcacc 3180086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 47661983 - 47661854
Alignment:
Q  10 atttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtg 107  Q
    ||||||||||||||||||| ||||| |||| |||||||    |||||||||||||  ||||||||||||||||||  ||||||||||||||| |||||||    
T  47661983 atttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtg 47661884  T
Q  108 attgatcaatgtcaccaatgccacccaagt 137  Q
    ||||  |||||||||||||| |||||||||    
T  47661883 attggccaatgtcaccaatgtcacccaagt 47661854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 6271841 - 6271716
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtgat 109  Q
    |||||||||||||||||  ||||||||| ||||||| |  |||||||||||||  ||||||||||||||  ||||||||||||||||||| |||||||||    
T  6271841 ttgggtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 6271742  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    ||  |||||||||||||  |||||||    
T  6271741 tggccaatgtcaccaatatcacccaa 6271716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 42375149 - 42375036
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||| |||||||  | |||||||||||||  ||||||||||||||  ||||||||||||||||||| |||||||||    
T  42375149 ttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 42375050  T
Q  110 tgatcaatgtcacc 123  Q
    ||| ||||||||||    
T  42375049 tgaccaatgtcacc 42375036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 23444266 - 23444393
Alignment:
Q  10 atttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtg 107  Q
    |||||||| |||||||||| ||||| |||| |||||||    |||||||||||||  |||||||||||||||  |||||||||||||||||| |||||||    
T  23444266 atttgggtaacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtg 23444365  T
Q  108 attgatcaatgtcaccaatgccacccaa 135  Q
    ||||  |||||||||||||| |||||||    
T  23444366 attggccaatgtcaccaatgtcacccaa 23444393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 26186044 - 26186130
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagagagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    ||||||| || |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||  |||||||| |||||    
T  26186044 tgacattggtcaatcacaatgtcacaatgcttgtgaaagagagaaacacaagcattgtgaaattgtgattggccaatgtcatcaatg 26186130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 51265584 - 51265459
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    ||||||||| ||||||| ||||| |||| |||||||    ||||| |||||||  ||||||||||||||||||  ||||||||||||||| |||||||||    
T  51265584 ttgggtgacttagagttgggtgacattggtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 51265485  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    ||  |||||||||||||| |||||||    
T  51265484 tggccaatgtcaccaatgtcacccaa 51265459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 55090024 - 55090107
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagagagaaa--cacaagcattgtgacattgtgattgatcaatgtcac 122  Q
    ||||||| || |||||||||||||  |||||||||||||||||| |  |||||||||||||||||||||||||| |||||||||    
T  55090024 tgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgattgaccaatgtcac 55090107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 53954745 - 53954636
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgat 113  Q
    ||||||||||||| ||||| |||| |||||||    ||| |||||||||  |||||||||||||||  |||||||| |||||||||||||||||||||      
T  53954745 gtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgattggc 53954646  T
Q  114 caatgtcacc 123  Q
    ||||||||||    
T  53954645 caatgtcacc 53954636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 35682301 - 35682189
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtgattgat 113  Q
    ||||||||||||| ||||| |||| |||||||     ||||||||||||  ||||||||||||||  |||||||||||| ||| ||||||||||||||      
T  35682301 gtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggc 35682202  T
Q  114 caatgtcaccaat 126  Q
    |||||||||||||    
T  35682201 caatgtcaccaat 35682189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 47404613 - 47404697
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||||| || |||||||||||||  ||||||||||||||||||  ||| ||||||||||| |||||||||||| ||||||||||    
T  47404613 tgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattgtggcattgtgattgaccaatgtcacc 47404697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 40789278 - 40789203
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaa 125  Q
    |||||||||||||  ||||||||||||||||||  ||||||| |||||||||||||||||||  ||||||||||||    
T  40789278 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcaccaa 40789203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 42375086 - 42375134
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42375086 cacaagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaa 42375134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 23444331 - 23444283
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  23444331 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 23444283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 47661918 - 47661966
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  47661918 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 47661966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 30861828 - 30861889
Alignment:
Q  67 atgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaat 126  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||  |||||||||||||    
T  30861828 atgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaat 30861889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 25818435 - 25818378
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaagtgctatcc 144  Q
    ||||| |||||||||||||||||||| |||||||| ||||| |||||||||| |||||    
T  25818435 cacaatcattgtgacattgtgattgaccaatgtcatcaatgtcacccaagtgttatcc 25818378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 47762727 - 47762635
Alignment:
Q  32 tgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcac 122  Q
    |||||||| ||||||| || || || |||||||  ||||||||||||||||||  |||| || |||||| |||||||||||| ||||||||||    
T  47762727 tgatattggtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcac 47762635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 51265521 - 51265569
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  51265521 cacaagcattgtgacattatgattggtcaatgtcaccaatgtcacccaa 51265569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 3862619 - 3862670
Alignment:
Q  84 aaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||| |||||||||||  |||||||||||||| |||||||    
T  3862619 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 3862670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 3871376 - 3871427
Alignment:
Q  84 aaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||| |||||||||||  |||||||||||||| |||||||    
T  3871376 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 3871427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 50384144 - 50384230
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaa--agagagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaagtgctatcc 144  Q
    |||||||||||||  |||||||||||  |||||||||||||||        ||||||||||||  ||||||||||||| ||||||||||||||||    
T  50384144 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaag--------cattgtgattgacgaatgtcaccaatgtcacccaagtgctatcc 50384230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 52028648 - 52028587
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattg 111  Q
    |||||||||||||  ||||||||||||||||||  ||||||| ||||||||||| |||||||    
T  52028648 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattg 52028587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 25818390 - 25818462
Alignment:
Q  30 ggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaa--agagagaaacacaagcattgtga 100  Q
    ||||| |||||||||||| || |||||||||||||  ||| |||||||  |||||||||||||| ||||||||    
T  25818390 ggtgacattgatgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaacacaatcattgtga 25818462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 35682242 - 35682287
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacc 132  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||||    
T  35682242 cacaagcattgtgacattgtgatcggtcaatgtcaccaatgtcacc 35682287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 6271696 - 6271764
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||| ||||||||||||||||| |||||||||| ||||||| |  |||||||||| ||  |||||||||    
T  6271696 aatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtg 6271764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 23444413 - 23444345
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||||||||||||||||||||| ||||| |||| ||||||| |  |||||||||| ||  |||||||||    
T  23444413 aatatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 23444345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 26186078 - 26186042
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||| ||||||||||    
T  26186078 cacaagcattgtgacattgtgattgaccaatgtcacc 26186042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 35682165 - 35682217
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtca 64  Q
    ||||||||||||||||| |||||||||| ||||||| |  |||||||||||||    
T  35682165 ttgggtgacatagagttaggtgatattggtgacattggccaatcacaatgtca 35682217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 47404647 - 47404611
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||| ||||||||||    
T  47404647 cacaagcattgtgacattgtgattgaccaatgtcacc 47404611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 53954686 - 53954734
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||||| ||||  |||||||||||||| |||||||    
T  53954686 cacaagcattgtgacattgtaattggacaatgtcaccaatgtcacccaa 53954734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 6271778 - 6271817
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaat 126  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  6271778 cacaagcattgtgacattgtgattggccaatgtcaccaat 6271817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 31532756 - 31532815
Alignment:
Q  78 agagagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaagt 137  Q
    ||||||||| |||| ||||||||| ||||||||| ||||||||||| ||| ||| |||||    
T  31532756 agagagaaatacaaacattgtgacgttgtgattggtcaatgtcacctatgtcacacaagt 31532815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 55090058 - 55090023
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcac 122  Q
    |||||||||||||||||||||||||| |||||||||    
T  55090058 cacaagcattgtgacattgtgattgaccaatgtcac 55090023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 31430520 - 31430487
Alignment:
Q  90 aagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||| |||||||||||    
T  31430520 aagcattgtgacattgtgattggtcaatgtcacc 31430487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 47762684 - 47762741
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaagtgctatcc 144  Q
    |||||||||||||||||| || |||| |||||||||||||  || |||| ||||||||    
T  47762684 cacaagcattgtgacattatggttgaccaatgtcaccaatatcatccaactgctatcc 47762741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 5048939 - 5048887
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtca 64  Q
    |||| |||||||||||| ||||| |||||||||||| || ||||| |||||||    
T  5048939 ttggatgacatagagttgggtgacattgatgacattggtcaatcataatgtca 5048887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 30710039 - 30709987
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtca 64  Q
    ||||||||||||||||| ||||| |||| ||||||| |  |||||||||||||    
T  30710039 ttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtca 30709987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 30861918 - 30861850
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||| ||||||||||||||||| | |||||||| ||||||| |  |||||||||| ||  |||||||||    
T  30861918 aatacttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtg 30861850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 38714826 - 38714858
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattg 39  Q
    |||||||||||||||||||||| ||||||||||    
T  38714826 aatatttgggtgacatagagttaggtgatattg 38714858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 50384167 - 50384131
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||  ||||||||||    
T  50384167 cacaagcattgtgacattgtgattggccaatgtcacc 50384131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 51265439 - 51265507
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||| ||||||||||||||||| ||||| |||| ||||||| |  |||||||||| ||  |||||||||    
T  51265439 aatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 51265507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 52028625 - 52028661
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||  ||||||||||    
T  52028625 cacaagcattgtgacattgtgattggccaatgtcacc 52028661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 48993916 - 48994041
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||| |||||||    |||||||||||||  |||||||||||||||  |||||||||||||||||| |||||||||    
T  48993916 ttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 48994015  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    || ||||||||||||||| |||||||    
T  48994016 tggtcaatgtcaccaatgtcacccaa 48994041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 33219712 - 33219601
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagagaaa--cacaagcattgtgacattgtgat 109  Q
    |||||| |||||||||| | ||| |||| |||||||  | |||||||||||||  ||||||||||||||||||||  |||||||||||| ||||||||||    
T  33219712 ttgggtaacatagagttggatgacattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgat 33219613  T
Q  110 tgatcaatgtca 121  Q
    ||||||||||||    
T  33219612 tgatcaatgtca 33219601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 49444912 - 49445023
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagagaaacacaagcattgtgacattgtgattg 111  Q
    ||||||||||||||||| ||||| |||| ||||||   | ||||||||||| |  |||||||||| |||||||||||||||||||||| |||||||||||    
T  49444912 ttgggtgacatagagttgggtgacattggtgacatcgatcaatcacaatgttacaatgcttgtgagagagagaaacacaagcattgtggcattgtgattg 49445011  T
Q  112 atcaatgtcacc 123  Q
      ||||||||||    
T  49445012 gccaatgtcacc 49445023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 29179596 - 29179721
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgat 109  Q
    |||| |||||||||||| ||||| |||| ||||| |    |||||||||||||  |||||||||||||||  |||||||||||||||||| |||||||||    
T  29179596 ttggatgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 29179695  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    ||  |||||||||||||| |||||||    
T  29179696 tggccaatgtcaccaatgtcacccaa 29179721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 32540755 - 32540864
Alignment:
Q  20 catagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaat 117  Q
    ||||||||| ||||| |||| || |||| |  |||||||||||||  |||||||||||||||  ||||||||||||||||| |||||||||||| |||||    
T  32540755 catagagttgggtgacattggtggcattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaat 32540854  T
Q  118 gtcaccaatg 127  Q
    ||||||||||    
T  32540855 gtcaccaatg 32540864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 15220952 - 15220837
Alignment:
Q  10 atttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtg 107  Q
    ||||||||||||||||||| ||||| |||| ||| ||| |  ||||||||| |||  ||||||||||||||  |||||||||||||||||||| || |||    
T  15220952 atttgggtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatgcttgtgaaagagagagaaacacaagcattgtgagatcgtg 15220853  T
Q  108 attgatcaatgtcacc 123  Q
    ||||| ||||||||||    
T  15220852 attgaccaatgtcacc 15220837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 4609106 - 4609010
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||| || |||||||||||||  ||||||||||||||||||  ||||||| ||||||||||||||||| | ||||||||||| ||| |||||||    
T  4609106 tgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaatgtcaccgatgtcacccaa 4609010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5995519 - 5995391
Alignment:
Q  1 acgggtaatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgt 98  Q
    |||||||| | ||||||||||||||||| | ||| |||| |||||||    |||||||||| ||  ||||||||||||||||||  ||||||||||||||    
T  5995519 acgggtaacacttgggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgt 5995420  T
Q  99 gacattgtgattgatcaatgtcaccaatg 127  Q
    | |||||||||||  |||||| |||||||    
T  5995419 ggcattgtgattggccaatgttaccaatg 5995391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 21630113 - 21630056
Alignment:
Q  78 agagagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  21630113 agagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 21630056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 46333972 - 46334056
Alignment:
Q  39 gatgacattagttaatcacaatgtcaggatgcttgtgaaagagagaaa--cacaagcattgtgacattgtgattgatcaatgtca 121  Q
    ||||||||| |  |||||||||||||  ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  46333972 gatgacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattggtcaatgtca 46334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 45728396 - 45728301
Alignment:
Q  42 gacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||| || |||||||||||||  ||||||||||||||||||  |||||||||||||||| |||||||||| ||||| ||||||||  |||||||    
T  45728396 gacattggtcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcaccaatatcacccaa 45728301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 17127603 - 17127685
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacc 132  Q
    |||||||||||||  |||||||||||||||  ||||||||||||||||||||||| |||||| |||||||||| |||| ||||    
T  17127603 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcactaatgtcacc 17127685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 37155145 - 37155063
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacc 132  Q
    |||||||||||||  || |||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||| ||||    
T  37155145 aatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtcacc 37155063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 38674544 - 38674603
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagagaaacacaagcattgtgacattgtgattg 111  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  38674544 aatcacaatgtcacaatgcttgtgaaagagagaaacacaagcattgtgacattatgattg 38674603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 741541 - 741614
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||| || ||||||||||    
T  741541 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatcgaccaatgtcacc 741614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 1091583 - 1091668
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||  |||||||||||||||  |||||||||| ||||||||||||||||||| |||| |||||||||  |||||||    
T  1091583 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcaccaatatcacccaa 1091668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 9157409 - 9157324
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||| |||  ||||||| ||||||||||  ||||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  9157409 aatcacaatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaa 9157324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 28395708 - 28395659
Alignment:
Q  78 agagagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatg 28395659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 29371467 - 29371394
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||  ||||||||||||||||||  ||||||| |||||||||||||||||||  ||||||||||    
T  29371467 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcacc 29371394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 8337879 - 8337963
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||||| || |||||||||||||  ||| |||||||||||  |||||||||| ||||||| ||||||||||| |||||||||||    
T  8337879 tgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaatgtcacc 8337963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 48993979 - 48993931
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  48993979 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 48993931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 36290461 - 36290531
Alignment:
Q  67 atgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||  ||||||||||  |||||||||||||||||| |||||| |||||||| |||||||    
T  36290461 atgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccaccaatgtcacccaa 36290531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 44706838 - 44706908
Alignment:
Q  67 atgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||  |||||||||||||||| | |||||||||||  |||||||||||||| |||||||    
T  44706838 atgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatgtcacccaa 44706908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 47303505 - 47303421
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||||| || |||||||||||||  ||| ||||||||||||||  ||||||| |||| |||||||||||||| ||||| |||||    
T  47303505 tgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaatatcacc 47303421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 1819551 - 1819515
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||||||||||||||    
T  1819551 cacaagcattgtgacattgtgattgatcaatgtcacc 1819515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 29179659 - 29179611
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  29179659 cacaagcattgtgacattgtgattggtcagtgtcaccaatgtcacccaa 29179611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 33219649 - 33219689
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  33219649 cacaagcattatgacattgtgattgatcaatgtcaccaatg 33219689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 37155040 - 37155108
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||| ||||||||||||||||||||||| |||| ||||||| |  |||||||||||||  |||||||||    
T  37155040 aatacttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 37155108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 49444975 - 49444927
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||    
T  49444975 cacaagcattgtaacattgtgattgatcgatgtcaccaatgtcacccaa 49444927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 34062308 - 34062235
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||  ||| ||||||||||||||  |||| |||||||||| |||||||||||  ||||||||||    
T  34062308 aatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgattggccaatgtcacc 34062235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 48498514 - 48498429
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||| |  ||||||||||||||||||  ||||||| |||||||  ||| ||||||| ||||||||| |||| |||||||    
T  48498514 aatcacaatgttaccatgcttgtgaaagagagagaaacacaaacattgtggtattatgattgaccaatgtcacaaatgtcacccaa 48498429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 17127626 - 17127581
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacc 132  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||    
T  17127626 cacaagcattgtgacattgtgattggtcaatgtcactaatgtcacc 17127581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 29371444 - 29371489
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacc 132  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  29371444 cacaagcattgtgacattgtgattggtcaatatcaccaatgtcacc 29371489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 4609072 - 4609108
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||| ||||||||||    
T  4609072 cacaagcattgtgacattgtgattgaccaatgtcacc 4609108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 5995445 - 5995485
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
T  5995445 cacaagcattgtggcattgtgattggtcaatgtcaccaatg 5995485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 32540810 - 32540762
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||||||||||  ||||| |||||||| |||||||    
T  32540810 cacaagcattgtgacattgtgattggccaatgccaccaatgtcacccaa 32540762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 5694943 - 5695001
Alignment:
Q  67 atgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||  ||||||||||  ||||||||||||| ||||| ||||||||||    
T  5694943 atgcttgtgaaagagagagaaacacaaatattgtgacattgtaattgaccaatgtcacc 5695001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 8337913 - 8337875
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaa 125  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  8337913 cacaaacattgtgacattgtgattgaccaatgtcaccaa 8337875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 19711219 - 19711273
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagagaaacacaagcattgtgacattgt 106  Q
    ||||||||||| |  |||| ||||||||||||||||| ||| |||||||||||||    
T  19711219 aatcacaatgttacaatgcatgtgaaagagagaaacataagaattgtgacattgt 19711273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 44706928 - 44706874
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatg 61  Q
    |||||||||||||||||||||| ||||| |||| ||||||| |  ||||||||||    
T  44706928 aatatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 44706874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 46932061 - 46932011
Alignment:
Q  85 aacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||| ||||||| |||||||||||  |||||||||||||| |||||||    
T  46932061 aacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaa 46932011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 32157602 - 32157639
Alignment:
Q  88 acaagcattgtgacattgtgattgatcaatgtcaccaa 125  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  32157602 acaagcattgtgacactgtgattgaccaatgtcaccaa 32157639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 741564 - 741528
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||  ||||||||||    
T  741564 cacaagcattgtgacattgtgattgggcaatgtcacc 741528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 9157388 - 9157420
Alignment:
Q  89 caagcattgtgacattgtgattgatcaatgtca 121  Q
    |||||||||||| ||||||||||||||||||||    
T  9157388 caagcattgtgatattgtgattgatcaatgtca 9157420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 15220887 - 15220935
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||| ||||||||||  |||| ||||||||| |||||||    
T  15220887 cacaagcattgtgagattgtgattggccaatatcaccaatgtcacccaa 15220935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 29179741 - 29179673
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||| ||||||||||||||||| ||||| |||| ||||||| |  |||||||||| ||  |||||||||    
T  29179741 aatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 29179673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 34062285 - 34062321
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  34062285 cacaaacattgtgacattgtgattggtcaatgtcacc 34062321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 36774864 - 36774836
Alignment:
Q  95 ttgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||||||    
T  36774864 ttgtgacattgtgattgatcaatgtcacc 36774836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 47303471 - 47303507
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  47303471 cacaaacattgtgacattgtgattgaccaatgtcacc 47303507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 48604975 - 48605058
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcac 122  Q
    ||||||| || |||||||||||||  ||  ||||||||||||||  ||| |||||||||||||||| | ||||  |||||||||    
T  48604975 tgacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgtcac 48605058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 7050 - 7168
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgat 113  Q
    ||||||||||||| ||||| |||| ||| |||||  |||||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||      
T  7050 gtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggc 7149  T
Q  114 caatgtcaccaatgccacc 132  Q
    |||||||||||||| ||||    
T  7150 caatgtcaccaatgtcacc 7168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 7109 - 7061
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||||||||||   ||| ||||||||| |||||||    
T  7109 cacaagcattgtgacattgtgattggctaatatcaccaatgtcacccaa 7061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 17751037 - 17750924
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagag--aaacacaagcattgtgacattgtgattgat 113  Q
    ||||||||||||| |||||||||||||||||| |   ||||||||||||  |||||||||||||||||  ||| |||| ||||||||||||||||||||     
T  17751037 gtgacatagagttgggtgatattgatgacattggccgatcacaatgtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgattgac 17750938  T
Q  114 caatgtcaccaatg 127  Q
    ||||||||||||||    
T  17750937 caatgtcaccaatg 17750924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 13043598 - 13043480
Alignment:
Q  10 atttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtg 107  Q
    |||||||||||||||||||  ||||||||| ||||||| | |||||||||| |||  ||||||||||||||  ||||||||||||||||||||||||  |    
T  13043598 atttgggtgacatagagttgagtgatattggtgacattggctaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattgtgacatttcg 13043499  T
Q  108 attgatcaatgtcaccaat 126  Q
    ||||| |||| || |||||    
T  13043498 attgaccaatatcgccaat 13043480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 24618604 - 24618713
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgat 113  Q
    ||||||||||||| ||||| |||| |||||||  | |||||||||||||  |||||| ||||||||  |||||||||||||||||||||||||||||| |    
T  24618604 gtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgattggt 24618703  T
Q  114 caatgtcacc 123  Q
    ||| ||||||    
T  24618704 caacgtcacc 24618713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 12343232 - 12343126
Alignment:
Q  19 acatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaa 116  Q
    |||||||||| ||||| |||| ||||||| |  |||||||||||||  ||||||||||||||||||  ||||||||||||||| ||||||||||||  ||    
T  12343232 acatagagttgggtgagattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgactaa 12343133  T
Q  117 tgtcacc 123  Q
    |||||||    
T  12343132 tgtcacc 12343126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 24587558 - 24587475
Alignment:
Q  54 tcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||  |||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||    
T  24587558 tcacaatgtcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaa 24587475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 10521888 - 10521960
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcac 122  Q
    |||||||||||||  |||||| ||||||||  ||||||||||||||| ||||||||||||||| |||||||||    
T  10521888 aatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgattgaccaatgtcac 10521960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 551193 - 551280
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaat 126  Q
    ||||||| || |||||||||| ||  ||| |||||||||||  |||||||||||||||||| |||||||||||  |||||||||||||    
T  551193 tgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaat 551280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 24618660 - 24618615
Alignment:
Q  90 aagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||    
T  24618660 aagcattatgacattgtgattgatcaatgtcaccaatgtcacccaa 24618615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 31654376 - 31654331
Alignment:
Q  78 agagagaaacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||    
T  31654376 agagagaaacacaagcattgtgacattgtgattggccaatgtcacc 31654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 2315366 - 2315330
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||| |||||||||||||||||||||||||||||||    
T  2315366 cacaaacattgtgacattgtgattgatcaatgtcacc 2315330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 12343176 - 12343224
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||||||||||  |||||||||||||  |||||||    
T  12343176 cacaagcattgtgacattgtgattggccaatgtcaccaatctcacccaa 12343224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 24975814 - 24975774
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  24975814 cacaagcattgtggcattgtgattgaccaatgtcaccaatg 24975774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 24975746 - 24975815
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtga 76  Q
    |||| ||||||||||||||||| | ||| |||| ||||||| || |||||||||| ||  ||||||||||    
T  24975746 aatacttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatgcttgtga 24975815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 551309 - 551241
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    ||||||||||||||||||| || | |||||||| ||||||| |  |||||||||| ||  |||||||||    
T  551309 aatatttgggtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgcttgtg 551241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 24587463 - 24587523
Alignment:
Q  15 ggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||||||||||||| ||||| |||  ||||||| || |||||||||||||  |||||||||    
T  24587463 ggtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 24587523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 14229355 - 14229453
Alignment:
Q  15 ggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaa--agagagaaacacaagcattgtgacattgtgattg 111  Q
    |||||||||||||| ||||| |||| ||||||| || |||||||||||||  |||||||||||  ||||||||||||||||||||||||||||||||||    
T  14229355 ggtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattg 14229453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 6722090 - 6721955
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| | ||| |||  ||| ||| |  |||||||||||||  ||| ||||||||||||||  |||||||||||||||| ||||||||    
T  6722090 ttgggtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgat 6721991  T
Q  110 tgatcaatgtcaccaatgccacccaagtgctatccg 145  Q
    || ||||||||||||||| || |||| |||||||||    
T  6721990 tggtcaatgtcaccaatgtcatccaaatgctatccg 6721955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 16514563 - 16514438
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||| |||||||    |||||||||||||  ||||||||||||||||||  |||||||||||| || ||| |||||    
T  16514563 ttgggtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgat 16514464  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    ||  |||||||||||||| |||||||    
T  16514463 tggccaatgtcaccaatgtcacccaa 16514438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 38933726 - 38933613
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||| |||| || |  ||||| |||||||  ||||||||||||||||||  ||||||||||||||| |||||||||    
T  38933726 ttgggtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 38933627  T
Q  110 tgatcaatgtcacc 123  Q
    || |||||||||||    
T  38933626 tggtcaatgtcacc 38933613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 6217223 - 6217336
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaa--agagagaaacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||| ||||||| |  |||||||||| ||  |||||||||||  |||||||||||||| ||||||| |||||||||    
T  6217223 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgat 6217322  T
Q  110 tgatcaatgtcacc 123  Q
    ||  ||||||||||    
T  6217323 tggccaatgtcacc 6217336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 15011379 - 15011292
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaagt 137  Q
    |||||||||||||  ||||||||||||||||||  ||||||| ||||||| |||||||||||  |||| ||||||||| |||||||||    
T  15011379 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatatcaccaatgtcacccaagt 15011292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 29925580 - 29925682
Alignment:
Q  23 agagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtc 120  Q
    |||||| |||||||||| ||||||| |    |||||||||||| |||||||||||||||  |||||||||| ||||||| |||||||||||  |||||||    
T  29925580 agagttgggtgatattggtgacattggcccctcacaatgtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtc 29925679  T
Q  121 acc 123  Q
    |||    
T  29925680 acc 29925682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 37762040 - 37762116
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagaga--gaaacacaagcattgtgacattgtgattgatcaatgtcaccaat 126  Q
    ||||||||||||   ||||||||||||||||  |||||||||||||||||| ||||||||||| | |||||||||||    
T  37762040 aatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtgatattgtgattgacccatgtcaccaat 37762116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 29508692 - 29508815
Alignment:
Q  15 ggtgacatagagtttggtgatattgatgacattagttaatcacaa-tgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattg 111  Q
    |||||||||||||| ||||| |||| |||||||    |||||||| || ||  |||||||||||||||  |||||||||||||||| | |||||||||||    
T  29508692 ggtgacatagagttgggtgacattggtgacattgaccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattg 29508791  T
Q  112 atcaatgtcaccaatgccacccaa 135  Q
      |||||||||||||  |||||||    
T  29508792 gccaatgtcaccaatatcacccaa 29508815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 2894075 - 2893989
Alignment:
Q  39 gatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||||||| || ||||||| |||||  ||||||||||||||||||  || ||||||||||||| ||||||||||  ||||||||||    
T  2894075 gatgacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtcacc 2893989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 37961854 - 37961732
Alignment:
Q  3 gggtaatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtga 100  Q
    |||||| | |||||||||||||||||  ||||||||  |||||||    |||||||||| ||  ||||||||||||||||||  ||||||| |||| ||     
T  37961854 gggtaacacttgggtgacatagagttgagtgatatttgtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatgg 37961755  T
Q  101 cattgtgattgatcaatgtcacc 123  Q
    ||||||||| | |||||||||||    
T  37961754 cattgtgatcggtcaatgtcacc 37961732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 2828683 - 2828610
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||  |||||| |||||||||||  |||||||||||| ||||||||||||||  ||||||||||    
T  2828683 aatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattggccaatgtcacc 2828610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 14470595 - 14470692
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattg 111  Q
    ||||||||||||| ||||| |||| |||||||    |||||||||||    |||||||||||||||  |||||||||| |||||||||||||||||||    
T  14470595 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattg 14470692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 14229415 - 14229370
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacc 132  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||    
T  14229415 cacaagcattgtgacattgtgattgaccaatgtcaccaatgtcacc 14229370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 16514500 - 16514548
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  16514500 cacaagcattgtgacattgtgattggtcaatgtcaccaatctcacccaa 16514548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 33018621 - 33018669
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  33018621 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaa 33018669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 24116055 - 24115942
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagag--aaacacaagcattgtgacattgtgattgat 113  Q
    ||||||||||||| ||||  |||  ||| ||| || ||||||||||||   ||||||||||||||| |  ||||||| ||||||| ||||||||||||      
T  24116055 gtgacatagagttgggtgccattagtgatattggtcaatcacaatgtcgcaatgcttgtgaaagagtgtgaaacacaggcattgtaacattgtgattggc 24115956  T
Q  114 caatgtcaccaatg 127  Q
    |||||| |||||||    
T  24115955 caatgttaccaatg 24115942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 1945461 - 1945540
Alignment:
Q  68 tgcttgtgaaagagagaaacac--aagcattgtgacattgtgattgatcaatgtcaccaatgccacccaagtgctatccg 145  Q
    ||||||||||||||||||| ||  ||||||||| | |||||||||| | |||||||| |||  ||||||| |||||||||    
T  1945461 tgcttgtgaaagagagaaaaacttaagcattgtaatattgtgattggttaatgtcactaatatcacccaattgctatccg 1945540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 6217286 - 6217238
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||| |||||||||||  |||||||||||||| |||||||    
T  6217286 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 6217238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 14470654 - 14470606
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||  |||||||||||| ||||||||||||||| |||||||    
T  14470654 cacaagcattgcaacattgtgattggtcaatgtcaccaatgtcacccaa 14470606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 32545927 - 32545855
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga 84  Q
    |||||||||||||||||| |||| |||| ||||||| |  ||||| |||||||  |||||| |||||||||||    
T  32545927 ttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatgcttatgaaagagaga 32545855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 9173050 - 9173105
Alignment:
Q  80 agagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||| |||||||||||| |||||||||||  |||| ||||||||| |||||||    
T  9173050 agagaaatacaagcattgtggcattgtgattggccaatatcaccaatgtcacccaa 9173105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 29508835 - 29508781
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatg 61  Q
    |||| ||||||||||||||||| |||||||||| ||||||| |  ||||||||||    
T  29508835 aatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatg 29508781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 14892343 - 14892376
Alignment:
Q  94 attgtgacattgtgattgatcaatgtcaccaatg 127  Q
    ||||| ||||||||||||||||||||||||||||    
T  14892343 attgtaacattgtgattgatcaatgtcaccaatg 14892376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 29508753 - 29508704
Alignment:
Q  87 cacaagcattgtgacatt-gtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||| |||| ||||||| ||||||||||||||| |||||||    
T  29508753 cacaagcattgtggcatttgtgattggtcaatgtcaccaatgtcacccaa 29508704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 8534259 - 8534168
Alignment:
Q  38 tgatgacattagttaatcacaatgtcaggatgcttgtgaaa--gagagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    |||||| ||| || ||| |||||||||  || |||||||||  |||||||||||||  ||| | ||||||| |||||||||||||| |||||    
T  8534259 tgatgatattggtcaattacaatgtcacaattcttgtgaaatagagagaaacacaaatatttttacattgtaattgatcaatgtcatcaatg 8534168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 14892401 - 14892299
Alignment:
Q  10 atttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtg 107  Q
    ||||||||||||||||||| | ||| |||| |||||||  | ||||||||||| |  || ||| |||||||  |||||| |||| || ||||||||||||    
T  14892401 atttgggtgacatagagttggatgacattggtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaagacaaaca-tgtgacattgtg 14892303  T
Q  108 attg 111  Q
    ||||    
T  14892302 attg 14892299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 24115996 - 24116044
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||| |||||||||||||| |||| |||| |||| |||||||    
T  24115996 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaa 24116044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 37632985 - 37633025
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacatt 47  Q
    |||| ||||||||||||||||||||||| |||| |||||||    
T  37632985 aatacttgggtgacatagagtttggtgacattggtgacatt 37633025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 38933663 - 38933711
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||| ||||||  ||| |||||||||| |||||||    
T  38933663 cacaagcattgtgacattatgattggccaacgtcaccaatgtcacccaa 38933711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 49702 - 49815
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| ||||||||||||    |||||||||||||  ||||||||||||||  ||||||||||||||||||| |||||||||    
T  49702 ttgggtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgat 49801  T
Q  110 tgatcaatgtcacc 123  Q
    ||  ||||||||||    
T  49802 tggccaatgtcacc 49815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 49765 - 49717
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  49765 cacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaa 49717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 11017008 - 11016883
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||| |||||||    |||||||||||||  ||| ||||||||||||||  ||||||||||||||| |||||||||    
T  11017008 ttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgat 11016909  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    ||  |||||||||||||| |||||||    
T  11016908 tggccaatgtcaccaatgtcacccaa 11016883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 38975941 - 38975819
Alignment:
Q  15 ggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattga 112  Q
    |||||||||||||| ||||| |||| |||||||  | ||| | |||| ||  ||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  38975941 ggtgacatagagttaggtgacattggtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattga 38975842  T
Q  113 tcaatgtcaccaatgccacccaa 135  Q
     |||||| ||||||| |||||||    
T  38975841 ccaatgttaccaatgtcacccaa 38975819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 4290684 - 4290559
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    |||||||||||| |||| ||||| |||| ||||||| |  |||||||||||||  || |||||||||||||||  ||||| ||||||||| |||||||||    
T  4290684 ttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgat 4290585  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    ||| |||| ||||||||  |||||||    
T  4290584 tgaccaatatcaccaatatcacccaa 4290559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 42628434 - 42628321
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||| ||| ||| |  ||||||||||||   ||||||||||||||||||  |||| |||||||||| |||||||||    
T  42628434 ttgggtgacatagagttgggtgacattggtgatattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgat 42628335  T
Q  110 tgatcaatgtcacc 123  Q
    || |||||||||||    
T  42628334 tggtcaatgtcacc 42628321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 34854734 - 34854819
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagaga--gaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||| ||  ||||||||||||||||  ||||||||| ||||||| |||||||||||| |||||||||||||| |||||||    
T  34854734 aatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcaccaatgtcacccaa 34854819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 41018267 - 41018352
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||   |||||||||||||||  ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||    
T  41018267 aatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaa 41018352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 4649432 - 4649346
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagagaga----aacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||||| || ||||||||||||| |||||||||||||||||||    ||||||||||||||  |||||||||||| ||||||||||    
T  4649432 tgacattggtcaatcacaatgtcacgatgcttgtgaaagagagagagaaacacaagcattgtagcattgtgattgaccaatgtcacc 4649346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 27028832 - 27028907
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaa 125  Q
    |||||||||||||  |||||| ||||||||  |||||||||| |||||||||||||||||||| ||||||||||||    
T  27028832 aatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattgaccaatgtcaccaa 27028907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 15027641 - 15027564
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    |||||||||||||  ||||||||||||||||||  ||||||| |||||||  |||||||||| |||||||||||||||    
T  15027641 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcaccaatg 15027564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 22764754 - 22764833
Alignment:
Q  67 atgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaagtgctatcc 144  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||  |||| ||||||||| |||  |||||||||||    
T  22764754 atgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcaccaatgtcacataagtgctatcc 22764833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 48000756 - 48000708
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  48000756 cacaagcattgtggcattgtgattgatcaatgtcaccaatgtcacccaa 48000708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 7671939 - 7672023
Alignment:
Q  41 tgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||  |||||||||| ||  |||||||||||||||  |||||||||| ||||||| |||||||||||  ||||||||||    
T  7671939 tgacattagccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 7672023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 27028795 - 27028750
Alignment:
Q  82 agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcaccaatg 27028750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 45231917 - 45231974
Alignment:
Q  78 agagagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||| ||||||||| ||||||||||||  |||||||||||||| |||||||    
T  45231917 agagagaaacaaaagcattgtaacattgtgattggccaatgtcaccaatgtcacccaa 45231974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 11016945 - 11016993
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  11016945 cacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaa 11016993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 15027618 - 15027658
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  15027618 cacaagcattgtgacattgtgattggtcaatgtcaccaatg 15027658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 48000688 - 48000765
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga 84  Q
    |||| ||||||||||| ||||| ||||| |||| |||||||  | |||||||||| ||  ||||||||||||||||||    
T  48000688 aatacttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgccacaatgcttgtgaaagagaga 48000765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 48000887 - 48000775
Alignment:
Q  1 acgggtaatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgt 98  Q
    |||||||| | |||||| |||||||||| ||||| |||| |||||||    |||||||||| ||  |||  |||||||||||||  ||||||| ||||||    
T  48000887 acgggtaacacttgggtcacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaacacaaacattgt 48000788  T
Q  99 gacattgtgattg 111  Q
    | |||||||||||    
T  48000787 ggcattgtgattg 48000775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 4290621 - 4290669
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||| ||||||||||||||||||  |||||||||||||| |||||||    
T  4290621 cacaagaattgtgacattgtgattggccaatgtcaccaatgtcacccaa 4290669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 29053368 - 29053426
Alignment:
Q  67 atgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||  |||||||||| ||||||| |||||||||||  ||||||||||    
T  29053368 atgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 29053426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 4290539 - 4290593
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatg 61  Q
    |||| ||||||||||||||||| |||||||||| ||| ||| || ||||||||||    
T  4290539 aatacttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatg 4290593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 4649398 - 4649436
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaa 125  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  4649398 cacaagcatcgtgacattgtgattgaccaatgtcaccaa 4649436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 34854839 - 34854785
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatg 61  Q
    |||| ||||||||||||||||| ||||| |||| ||||||| || ||||||||||    
T  34854839 aatacttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatg 34854785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 48000819 - 48000861
Alignment:
Q  93 cattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||    
T  48000819 cattgtggcattgtgattggtcaatgtcaccaatgtcacccaa 48000861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 38975881 - 38975926
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacc 132  Q
    ||||||||||||| |||| | |||||||||||||||||||| ||||    
T  38975881 cacaagcattgtggcattataattgatcaatgtcaccaatgtcacc 38975926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 6225540 - 6225596
Alignment:
Q  28 ttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga 84  Q
    ||||||| ||||||||||||| | ||||||||||||| | | ||| |||||||||||    
T  6225540 ttggtgacattgatgacattaatcaatcacaatgtcacggtccttatgaaagagaga 6225596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 10419556 - 10419485
Alignment:
Q  53 atcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtgattgatcaatgtcac 122  Q
    ||||||||||||  |  |||||||||||  |||||||||||| ||||| ||||| ||||||| |||||||||    
T  10419556 atcacaatgtcacaaaacttgtgaaagagagagaaacacaagtattgtaacattatgattgaccaatgtcac 10419485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 11016863 - 11016931
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||| ||||||||||||||||| ||||| |||| ||||||| |  |||||||||| ||  |||||||||    
T  11016863 aatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 11016931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 38975799 - 38975867
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    |||| ||||||||||||||||| ||||| |||| | ||||| || |||||||||| ||  |||||||||    
T  38975799 aatacttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtg 38975867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 42628371 - 42628419
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||| |||||||||||||  |||| ||||||||| |||||||    
T  42628371 cacaagcattgggacattgtgattggccaatatcaccaatgtcacccaa 42628419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 41753114 - 41752978
Alignment:
Q  1 acgggtaatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagaga--gaaacacaagcattgt 98  Q
    |||||||| | |||||||||||||||||  |||| |||| ||||||| |  |||||||||| ||  ||||||||||||||||  ||||||||| ||||||    
T  41753114 acgggtaacacttgggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagaaagaaacacaaacattgt 41753015  T
Q  99 gacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    | |||||||||||  |||||||||||||| |||||||    
T  41753014 ggcattgtgattggccaatgtcaccaatgtcacccaa 41752978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 50524841 - 50524730
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtgat 109  Q
    |||||||||||||||||  |||| |||| ||| |||||| ||||||||||| | |||||||||||||||  ||||||||||| |||||||||||| ||||    
T  50524841 ttgggtgacatagagttgagtgacattggtgatattagtcaatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgat 50524742  T
Q  110 tgatcaatgtca 121  Q
    || |||||||||    
T  50524741 tggtcaatgtca 50524730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 30734405 - 30734523
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattgtgacattgtgattgat 113  Q
    ||||||||||||||||||| ||||||||||||     ||||||||||||  ||||||||||||||  |||||||||||| ||| ||||||||||||||      
T  30734405 gtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggc 30734504  T
Q  114 caatgtcaccaatgccacc 132  Q
    |||||||||||||| ||||    
T  30734505 caatgtcaccaatgtcacc 30734523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 1801436 - 1801558
Alignment:
Q  3 gggtaatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaa--agagagaaacacaagcattgtga 100  Q
    |||||| | ||||||||||||||||| ||||| |||| ||||||| |  |||||||||| ||  |||||||||||  |||||||||||||| |||||||     
T  1801436 gggtaacacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtgg 1801535  T
Q  101 cattgtgattgatcaatgtcacc 123  Q
    |||||||||||  ||||||||||    
T  1801536 cattgtgattggccaatgtcacc 1801558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 33689275 - 33689190
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||||| |||| ||| ||||| |||||||    
T  33689275 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaa 33689190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 43139748 - 43139833
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||| |||||| ||||  |||||||||||||| |||||||    
T  43139748 aatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtcaccaatgtcacccaa 43139833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 30476513 - 30476585
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcac 122  Q
    |||||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  30476513 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcac 30476585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 47677295 - 47677367
Alignment:
Q  53 atcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    ||||||||||||  |||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  47677295 atcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattgatcaatgtcacc 47677367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 51046061 - 51046189
Alignment:
Q  1 acgggtaatatttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgt 98  Q
    |||||||  |||||| |||||||||||| | |||||||| |||||||  | ||||| |||||||  ||| |||||||||||  ||||||||||||||| |    
T  51046061 acgggtagcatttggatgacatagagttggatgatattggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattat 51046160  T
Q  99 gacattgtgattgatcaatgtcaccaatg 127  Q
    | |||||||||||  ||||||||||||||    
T  51046161 ggcattgtgattggccaatgtcaccaatg 51046189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 47492064 - 47492171
Alignment:
Q  30 ggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaa--gagagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    ||||| |||| ||||||| |  |||||||||||||  ||||||||||||  |||||||||||||||||||||||||||||||||  |||| | |||||||    
T  47492064 ggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaatatgaccaatg 47492163  T
Q  128 ccacccaa 135  Q
     |||||||    
T  47492164 tcacccaa 47492171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 18321763 - 18321665
Alignment:
Q  39 gatgacattagttaatcacaatgtcaggatgcttgtgaaagagagaaa--cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||| || |||||||||||||  |||| ||||||| |||||||  ||||| | |||||||||||||||||| |||||||||||||  |||||||    
T  18321763 gatgacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcaccaatatcacccaa 18321665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 45103171 - 45103123
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  45103171 cacaagcattgtgacattgtgattgatcaatatcaccaatgtcacccaa 45103123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 30580814 - 30580880
Alignment:
Q  71 ttgtgaaagaga--gaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||  |||||||||||| ||||||||||||||||| ||||||||| |||| |||||||    
T  30580814 ttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaa 30580880  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 29031753 - 29031826
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||  |||||||||||||||  |||||||||| |||||||||||||| ||||| |||| |||||    
T  29031753 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtaattgaccaatatcacc 29031826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 50550074 - 50549998
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcaccaat 126  Q
    ||||| |||||||  ||| ||||||||||||||  |||||||||||||| | |||||||||| ||||||||||||||    
T  50550074 aatcataatgtcataatgtttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcaccaat 50549998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 45103108 - 45103180
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagaga 84  Q
    ||||||||||||||||| ||||| |||| ||| |||  | |||||||||||||  ||||||||||||||||||    
T  45103108 ttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgcttgtgaaagagaga 45103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 47492109 - 47492061
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    |||||||||||||||||||||||||  |||||||||||||| |||||||    
T  47492109 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaa 47492061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 39057015 - 39057078
Alignment:
Q  69 gcttgtgaaagagagaaacacaagcattgtgacattgtgattgatcaatgtcaccaatgccacc 132  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||  | |||||||||||| ||||    
T  39057015 gcttgtgaaagagagaaacacaaacatcgtgacattgtcattgtccgatgtcaccaatgtcacc 39057078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 1801508 - 1801460
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||| |||||||||||  |||||||||||||| |||||||    
T  1801508 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 1801460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 33689179 - 33689238
Alignment:
Q  16 gtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtg 75  Q
    ||||||||||||| ||||| |||||||| ||| || |||||||||||||  |||||||||    
T  33689179 gtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtg 33689238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 51046135 - 51046096
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaat 126  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  51046135 cacaaacattgtgacattatgattgatcaatgtcaccaat 51046096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 21024092 - 21024209
Alignment:
Q  10 atttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagagagaaacacaa-gca-ttgtgacattgtg 107  Q
    |||||||||||||| | || | |||||||| ||||||| || || ||||||||||  || ||||||||||||||||| | || |||  ||||||||| ||    
T  21024092 atttgggtgacataaaatt-gatgatattggtgacattggtcaaacacaatgtcacaattcttgtgaaagagagaaaaaaaaggcacgtgtgacattatg 21024190  T
Q  108 attgatcaatgtcaccaat 126  Q
     ||| ||||||||||||||    
T  21024191 gttggtcaatgtcaccaat 21024209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 47677317 - 47677279
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaa 125  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  47677317 cacaagcattgtgacattgtgatcggtcaatgtcaccaa 47677279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 18321657 - 18321702
Alignment:
Q  19 acatagagtttggtgatattgatgacattagttaatcacaatgtca 64  Q
    |||||||||| |||||||||| ||||||| || |||||||||||||    
T  18321657 acatagagttgggtgatattggtgacattggtcaatcacaatgtca 18321702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 30734464 - 30734419
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacc 132  Q
    ||||||||||||||||||||||| | ||||||||| ||||| ||||    
T  30734464 cacaagcattgtgacattgtgatcggtcaatgtcatcaatgtcacc 30734419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 29031776 - 29031740
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||| |||| |||||    
T  29031776 cacaagcattgtgacattgtgattgaccaatatcacc 29031740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 30476536 - 30476500
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||  ||||||||||    
T  30476536 cacaagcattgtgacattgtgattggccaatgtcacc 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 30734541 - 30734489
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtca 64  Q
    ||||||||||||||||| ||||| |||| ||||||| |  |||||||||||||    
T  30734541 ttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtca 30734489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 33689252 - 33689288
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||  ||||||||||    
T  33689252 cacaagcattgtgacattgtgattggccaatgtcacc 33689288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 41753040 - 41753080
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatg 127  Q
    ||||||||||||| |||||||||||  ||||||||||||||    
T  41753040 cacaagcattgtggcattgtgattggccaatgtcaccaatg 41753080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 43139853 - 43139813
Alignment:
Q  7 aatatttgggtgacatagagtttggtgatattgatgacatt 47  Q
    |||||||||||||||||||||| ||||| |||| |||||||    
T  43139853 aatatttgggtgacatagagttgggtgacattggtgacatt 43139813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 27219 - 27344
Alignment:
Q  12 ttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaagag--agaaacacaagcattgtgacattgtgat 109  Q
    ||||||||||||||||| ||||| |||  ||| ||| |  |||||||||||||  || ||||||||||||  ||||||| |||||||||| |||||||||    
T  27219 ttgggtgacatagagttgggtgacattagtgatattggccaatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgat 27318  T
Q  110 tgatcaatgtcaccaatgccacccaa 135  Q
    ||  |||| ||||||||| |||||||    
T  27319 tggccaatatcaccaatgtcacccaa 27344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 63856 - 63783
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaagagaga--aacacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||  ||||||||||||||||||  ||||||| ||||||| |||||||||||  ||||||||||    
T  63856 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 63783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 63833 - 63869
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcacc 123  Q
    |||||||||||||||||||||||||  ||||||||||    
T  63833 cacaagcattgtgacattgtgattggccaatgtcacc 63869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 19184 - 19136
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtcaccaatgccacccaa 135  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  19184 cacaagcattgtgacattgtgattgatcaatatcatcaatgtcacccaa 19136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 19119 - 19207
Alignment:
Q  10 atttgggtgacatagagtttggtgatattgatgacattagttaatcacaatgtcaggatgcttgtgaaag--agagaaacacaagcatt 96  Q
    ||||| ||||||||||||| ||||| |||||||| |||  | |||||||||||||  ||||||||| |||  |||||||||||| ||||    
T  19119 atttgtgtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgcttgtggaagaaagagaaacacaaacatt 19207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 2289 - 2322
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtc 120  Q
    ||||||||||||||||||||||||||||||||||    
T  2289 cacaagcattgtgacattgtgattgatcaatgtc 2322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 2312 - 2265
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattg 97  Q
    |||||||||||||  ||||||||||||||  |||||||||||||||||    
T  2312 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 2289 - 2322
Alignment:
Q  87 cacaagcattgtgacattgtgattgatcaatgtc 120  Q
    ||||||||||||||||||||||||||||||||||    
T  2289 cacaagcattgtgacattgtgattgatcaatgtc 2322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 2312 - 2265
Alignment:
Q  52 aatcacaatgtcaggatgcttgtgaaaga--gagaaacacaagcattg 97  Q
    |||||||||||||  ||||||||||||||  |||||||||||||||||    
T  2312 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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