View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19414_low_26 (Length: 247)

Name: NF19414_low_26
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19414_low_26
NF19414_low_26
[»] chr3 (12 HSPs)
chr3 (1-232)||(9323254-9323485)
chr3 (49-232)||(13178142-13178324)
chr3 (49-180)||(13341040-13341169)
chr3 (96-227)||(11829833-11829965)
chr3 (96-219)||(15331633-15331754)
chr3 (17-155)||(21528326-21528464)
chr3 (98-232)||(3646705-3646839)
chr3 (37-82)||(27486221-27486266)
chr3 (29-82)||(46348765-46348818)
chr3 (3-69)||(8711415-8711481)
chr3 (3-69)||(9063302-9063368)
chr3 (26-80)||(21318255-21318309)
[»] chr6 (6 HSPs)
chr6 (17-229)||(17208671-17208882)
chr6 (96-229)||(34659645-34659779)
chr6 (17-232)||(10481756-10481969)
chr6 (93-155)||(240179-240241)
chr6 (120-232)||(19731138-19731251)
chr6 (36-82)||(225232-225278)
[»] chr2 (9 HSPs)
chr2 (17-232)||(26653604-26653817)
chr2 (35-232)||(26654953-26655147)
chr2 (3-182)||(8685361-8685538)
chr2 (52-182)||(21824175-21824305)
chr2 (35-232)||(22132510-22132704)
chr2 (2-96)||(16152442-16152536)
chr2 (52-182)||(21823315-21823445)
chr2 (4-68)||(16197696-16197760)
chr2 (97-166)||(16152611-16152680)
[»] chr1 (5 HSPs)
chr1 (1-222)||(24006473-24006693)
chr1 (41-184)||(22638007-22638151)
chr1 (113-213)||(24897248-24897349)
chr1 (145-227)||(24285720-24285800)
chr1 (1-72)||(9756768-9756839)
[»] scaffold0002 (1 HSPs)
scaffold0002 (49-232)||(128664-128846)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-229)||(26112-26338)
[»] chr7 (8 HSPs)
chr7 (49-227)||(19143046-19143222)
chr7 (49-227)||(20742445-20742621)
chr7 (4-232)||(2641916-2642145)
chr7 (1-229)||(17918385-17918604)
chr7 (2-232)||(4876104-4876337)
chr7 (2-211)||(2277847-2278055)
chr7 (1-232)||(9704419-9704649)
chr7 (1-141)||(17915327-17915464)
[»] chr5 (10 HSPs)
chr5 (1-232)||(19569836-19570066)
chr5 (27-229)||(9823913-9824104)
chr5 (69-232)||(18304041-18304206)
chr5 (4-128)||(21216660-21216782)
chr5 (121-229)||(22748117-22748225)
chr5 (10-177)||(23110029-23110194)
chr5 (96-182)||(16525141-16525227)
chr5 (1-69)||(21391465-21391533)
chr5 (2-72)||(28760303-28760373)
chr5 (13-69)||(26013527-26013584)
[»] scaffold0711 (1 HSPs)
scaffold0711 (1-232)||(1851-2080)
[»] chr8 (11 HSPs)
chr8 (3-182)||(23433153-23433330)
chr8 (27-232)||(18565677-18565881)
chr8 (74-214)||(20267508-20267649)
chr8 (74-214)||(21054137-21054278)
chr8 (17-231)||(13644918-13645131)
chr8 (17-231)||(13745343-13745556)
chr8 (120-229)||(21838611-21838721)
chr8 (1-182)||(5828600-5828783)
chr8 (1-182)||(5826001-5826184)
chr8 (1-72)||(24987675-24987746)
chr8 (48-182)||(5825600-5825736)
[»] chr4 (4 HSPs)
chr4 (2-182)||(22316930-22317109)
chr4 (40-231)||(8911296-8911484)
chr4 (96-232)||(39980880-39981017)
chr4 (1-232)||(13570686-13570916)
[»] scaffold0302 (1 HSPs)
scaffold0302 (96-218)||(13979-14099)
[»] scaffold0084 (1 HSPs)
scaffold0084 (96-153)||(17791-17848)
[»] scaffold0062 (1 HSPs)
scaffold0062 (4-81)||(2398-2475)
[»] scaffold0032 (1 HSPs)
scaffold0032 (25-80)||(79144-79199)
[»] scaffold0300 (1 HSPs)
scaffold0300 (160-232)||(11753-11826)
[»] scaffold0068 (1 HSPs)
scaffold0068 (7-72)||(57168-57233)
[»] scaffold0211 (1 HSPs)
scaffold0211 (97-227)||(25406-25535)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9323485 - 9323254
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9323485 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctttgaaattcatatc 9323386  T
Q  101 ttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9323385 ttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaatt 9323286  T
Q  201 agaaagtctctcgcctgcgtgcatgagcatat 232  Q
    ||||||||||||||||||||||||||||||||    
T  9323285 agaaagtctctcgcctgcgtgcatgagcatat 9323254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 13178142 - 13178324
Alignment:
Q  49 gtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccatt 148  Q
    |||||||||||||||||||||||| ||| ||||||||| | || || ||||||||||||||||||||||||||||||||| |||| ||  ||||||||||    
T  13178142 gtcaaatcaaatagcgcaaaacacttagaattttagctttcaagtttatatcttagaaatcctaaggagtctgttcatttgttcagtt--cactaccatt 13178239  T
Q  149 gttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaatt-agaaagtctctcgcctgcgtgcatgagcatat 232  Q
    |||||||  | |||||||| ||| |||||||||| || ||||| ||||| || |||||||||||||||||||||| |||||||||    
T  13178240 gttaaatctagtgtaagaaaaaagtaacttgtttgcagttgtgcaaacatttaagaaagtctctcgcctgcgtgcttgagcatat 13178324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 13341040 - 13341169
Alignment:
Q  49 gtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccatt 148  Q
    |||||||||||||||||||||||| ||| ||||||||| | || || ||||||||||||||||||||||||||||||||| |||| ||  ||||||||||    
T  13341040 gtcaaatcaaatagcgcaaaacacttagaattttagctttcaagtttatatcttagaaatcctaaggagtctgttcatttgttcagtt--cactaccatt 13341137  T
Q  149 gttaaattcaatgtaagaataaattaacttgt 180  Q
    |||||||  | |||||||| ||| ||||||||    
T  13341138 gttaaatctagtgtaagaaaaaagtaacttgt 13341169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 11829833 - 11829965
Alignment:
Q  96 atatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaa 195  Q
    ||||||||||||||||||||||||||||||||| || | |||||| | | ||||||||||  | |||||||| ||||||||||||||||  |||||||||    
T  11829833 atatcttagaaatcctaaggagtctgttcatttgtttagtttacattgcaattgttaaatcgagtgtaagaacaaattaacttgtttaccgttgtgtaaa 11829932  T
Q  196 ca-attagaaagtctctcgcctgcgtgcatgag 227  Q
    ||  ||||||||||||||||||| |||| ||||    
T  11829933 cattttagaaagtctctcgcctgtgtgcttgag 11829965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 15331633 - 15331754
Alignment:
Q  96 atatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaa 195  Q
    |||||||||||||||||| | |||||||||||| |||| |||||||||| ||||||||||  | |||||||| |  |||  ||||||||  || ||||||    
T  15331633 atatcttagaaatcctaaagggtctgttcatttgttcagtttacactactattgttaaatcaagtgtaagaacactttatgttgtttac--ttttgtaaa 15331730  T
Q  196 caattagaaagtctctcgcctgcg 219  Q
    || ||||||||| |||||||||||    
T  15331731 catttagaaagtttctcgcctgcg 15331754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 21528326 - 21528464
Alignment:
Q  17 aagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaagga 116  Q
    |||||| | ||||||| || |||||||||| | ||||||| |||||| ||||||||  |||||||| |   | ||||||||| |||||||||||||| ||    
T  21528326 aagactctactattttactatgtcattactctttcaaatctaatagcacaaaacactaaggatttttgtatttaaattcataccttagaaatcctaaaga 21528425  T
Q  117 gtctgttcattttttcaatttacactaccattgttaaat 155  Q
    |||| ||||||   ||| | |||||||||||||||||||    
T  21528426 gtcttttcattcggtcagtgtacactaccattgttaaat 21528464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 232
Target Start/End: Complemental strand, 3646839 - 3646705
Alignment:
Q  98 atcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaaca 197  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||  | | |||| |   | |||||||| |||||||| ||||| ||||||   |||||    
T  3646839 atcttagaaatcctagggagtctgttcatttgttcagtttacacttac-tggttagaaaaagtgtaagaacaaattaacgtgtttgcaattggacaaaca 3646741  T
Q  198 -attagaaagtctctcgcctgcgtgcatgagcatat 232  Q
      |||||||||||||||||||||||| |||| ||||    
T  3646740 ctttagaaagtctctcgcctgcgtgcttgagtatat 3646705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 27486221 - 27486266
Alignment:
Q  37 tgtcattactttgtcaaatcaaatagcgcaaaacacataggatttt 82  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||    
T  27486221 tgtcattactctaccaaatcaaatagcgcaaaacacataggatttt 27486266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 46348818 - 46348765
Alignment:
Q  29 tttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggatttt 82  Q
    |||| ||||||| ||||| || |||||||||||||||||||||| |||||||||    
T  46348818 ttttactgtgtcgttactatgccaaatcaaatagcgcaaaacacttaggatttt 46348765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 8711415 - 8711481
Alignment:
Q  3 gaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaa 69  Q
    |||||||||||||||||||| | |||||    |||| ||||||||||||||||  ||||||||||||    
T  8711415 gaagaagaagtaataagactctgctattcaattgtgccattactttgtcaaatttaatagcgcaaaa 8711481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 9063302 - 9063368
Alignment:
Q  3 gaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaa 69  Q
    |||||||||||||||||||| | |||||    |||| ||||||||||||||||  ||||||||||||    
T  9063302 gaagaagaagtaataagactctgctattcaattgtgccattactttgtcaaatttaatagcgcaaaa 9063368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 21318309 - 21318255
Alignment:
Q  26 ctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggatt 80  Q
    ||||||||||||| ||  ||| ||||| ||||||||||||||||||| |||||||    
T  21318309 ctatttttctgtgccaaaactctgtcatatcaaatagcgcaaaacacttaggatt 21318255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 17208882 - 17208671
Alignment:
Q  17 aagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaagga 116  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| || | |  || |||||||||||||||||||||    
T  17208882 aagactttgctatttttctgtttcattactctgtcaaatcaaatagcgcaaaacacttaggattttatctttcaggtttatatcttagaaatcctaagga 17208783  T
Q  117 gtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcct 216  Q
    ||||||||||| || ||||||||| |||||||||||||| || |||||||| ||||||| ||||||||| ||||||||||| ||| ||||||||||| ||    
T  17208782 gtctgttcattatt-caatttacattaccattgttaaatccagtgtaagaacaaattaaattgtttacagttgtgtaaacatttataaagtctctcgtct 17208684  T
Q  217 gcgtgcatgagca 229  Q
    | |||| ||||||    
T  17208683 gtgtgcttgagca 17208671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 34659779 - 34659645
Alignment:
Q  96 atatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaa-tgtaagaataaattaacttgtttacaattgtgtaa 194  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||||| ||||| ||||||||||  ||||||||    
T  34659779 atatcttagaaatcctaaggagtctgttcatttgttcagtttacactaccattgttaa-ttcaagtgtaagaacaaatttacttgtttactgttgtgtaa 34659681  T
Q  195 aca-attagaaagtctctcgcctgcgtgcatgagca 229  Q
    |||  |||| ||||||||||||||||||| ||||||    
T  34659680 acattttagtaagtctctcgcctgcgtgcttgagca 34659645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 10481969 - 10481756
Alignment:
Q  17 aagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaagga 116  Q
    |||||||| ||||||| ||||| || |||| |  |||||| ||||||  ||||||| ||||||||| |   | || ||||||||||||||||||||| ||    
T  10481969 aagactttgctattttactgtgccactactctaccaaatctaatagcttaaaacacttaggatttttgtattcaagttcatatcttagaaatcctaaaga 10481870  T
Q  117 gtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcct 216  Q
    | |||||||||| |||| |||||||||||| | |||||| || | |||||| ||| |||||||||||||  | | |||||| |||||||||  |||||||    
T  10481869 gcctgttcatttgttcagtttacactaccacttttaaatccagtttaagaacaaactaacttgtttaca--tttttaaacatttagaaagttcctcgcct 10481772  T
Q  217 gcgtgcatgagcatat 232  Q
    |||||| || ||||||    
T  10481771 gcgtgcttgggcatat 10481756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 240179 - 240241
Alignment:
Q  93 ttcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaat 155  Q
    ||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||    
T  240179 ttcatatcttagaaatcctaaagagtttgttcatttgttcaaattacactaccattgttaaat 240241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 19731251 - 19731138
Alignment:
Q  120 tgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaaca-attagaaagtctctcgcctgc 218  Q
    ||||||||| |||||||||||| | |||||||||||  | |||||||| |||||||||||||| || ||| | |||||  ||||||||| ||| ||||||    
T  19731251 tgttcatttgttcaatttacacaatcattgttaaatatagtgtaagaacaaattaacttgtttgcagttggggaaacattttagaaagtatcttgcctgc 19731152  T
Q  219 gtgcatgagcatat 232  Q
    |||| |||||||||    
T  19731151 gtgcttgagcatat 19731138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 225278 - 225232
Alignment:
Q  36 gtgtcattactttgtcaaatcaaatagcgcaaaacacataggatttt 82  Q
    ||||||||||| ||||||||| ||||||||||||||| ||| |||||    
T  225278 gtgtcattactctgtcaaatctaatagcgcaaaacacttagaatttt 225232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 26653604 - 26653817
Alignment:
Q  17 aagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaagga 116  Q
    |||||| | ||||||| ||||||||||||| ||||||||| ||||||||||||||| || |||||| |   | || || |||||||||||||||||| ||    
T  26653604 aagactctgctattttactgtgtcattactctgtcaaatctaatagcgcaaaacacttatgatttttgtattcaagtttatatcttagaaatcctaaaga 26653703  T
Q  117 gtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcct 216  Q
    |||||||||||| |||| |||||||||||||||||||||  | |||||||| ||||||||||||||||  || | |||||| ||||||| ||||||||||    
T  26653704 gtctgttcatttgttcagtttacactaccattgttaaatcaagtgtaagaacaaattaacttgtttac--ttttataaacatttagaaaatctctcgcct 26653801  T
Q  217 gcgtgcatgagcatat 232  Q
    ||| || |||||||||    
T  26653802 gcgcgcttgagcatat 26653817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 232
Target Start/End: Original strand, 26654953 - 26655147
Alignment:
Q  35 tgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaa 134  Q
    |||||||||||| ||||||||| |||||| |||||||| |||||||||     | || |||||||| |||||||| ||| ||||||||| |||| ||||     
T  26654953 tgtgtcattactctgtcaaatctaatagcacaaaacacttaggatttttatattcaagttcatatcatagaaatcgtaaagagtctgtttatttgttcag 26655052  T
Q  135 tttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcctgcgtgcatgagcatat 232  Q
    |||||||||||||||||||||  | |||||||| ||||||| |||||| |   | |||||||| ||||||||| |||||||||||||| |||||||||    
T  26655053 tttacactaccattgttaaataaagtgtaagaacaaattaatttgttttc---tttgtaaacatttagaaagtttctcgcctgcgtgcttgagcatat 26655147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 8685538 - 8685361
Alignment:
Q  3 gaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatctt 102  Q
    ||||||||||||| |||||| | |||||||| |||| ||||||| | ||||||||||||  ||||||||| ||||||||    ||  || || |||||||    
T  8685538 gaagaagaagtaacaagactctgctatttttttgtgccattactctatcaaatcaaataatgcaaaacacttaggatttattttc--aagtttatatctt 8685441  T
Q  103 agaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgttt 182  Q
    ||||||||||||||||||||||| || |||| ||| ||||| |||||||||||  | |||||||| ||||||||||||||    
T  8685440 agaaatcctaaggagtctgttcaattgttcagtttgcactatcattgttaaatctagtgtaagaacaaattaacttgttt 8685361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 21824305 - 21824175
Alignment:
Q  52 aaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgtt 151  Q
    |||||||||||||||||| |  |||||||||| || | |  || ||||||||||||| ||||  |||||  |||||| |||| ||||||| |||||||||    
T  21824305 aaatcaaatagcgcaaaaaaattaggattttaactttaaggttgatatcttagaaattctaaaaagtctactcatttgttcagtttacacaaccattgtt 21824206  T
Q  152 aaattcaatgtaagaataaattaacttgttt 182  Q
    ||||  | |||||||| ||||||||||||||    
T  21824205 aaatcaagtgtaagaacaaattaacttgttt 21824175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 232
Target Start/End: Original strand, 22132510 - 22132704
Alignment:
Q  35 tgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaa 134  Q
    |||| ||||||| | ||||||| |||| |||||||||| || ||||||     | || |||||||||||||||| | || |||| | ||||||| ||||     
T  22132510 tgtgacattactctatcaaatctaataacgcaaaacacttaagatttttttattcaagttcatatcttagaaattcaaaagagtttattcatttgttcag 22132609  T
Q  135 tttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcctgcgtgcatgagcatat 232  Q
    |||||||||  |||||||||||   |||||||| ||||| | ||||||||   | |||||||| ||| |||||| || |||||||||| |||||||||    
T  22132610 tttacactaatattgttaaattaggtgtaagaacaaattgatttgtttac---tttgtaaacatttaaaaagtcgcttgcctgcgtgcttgagcatat 22132704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 16152442 - 16152536
Alignment:
Q  2 tgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattca 96  Q
    ||||||||||| || |||||| | |||||||||| ||||| |||| |||||||| |||| | ||||||||| ||||||||||||| |||| ||||    
T  16152442 tgaagaagaagaaacaagactctgctatttttctatgtcaatactctgtcaaattaaattgagcaaaacacttaggattttagctttgaagttca 16152536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 21823445 - 21823315
Alignment:
Q  52 aaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgtt 151  Q
    |||||||||||| ||||| |  |||||||||| || | |  || ||||||||||||| ||||  |||||  |||||| |||| ||||||| |||||||||    
T  21823445 aaatcaaatagcacaaaaaatttaggattttaactttaaggttgatatcttagaaattctaaaaagtctactcatttgttcagtttacacaaccattgtt 21823346  T
Q  152 aaattcaatgtaagaataaattaacttgttt 182  Q
    ||||  | |||||||| ||||||||||||||    
T  21823345 aaatcaagtgtaagaacaaattaacttgttt 21823315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 16197696 - 16197760
Alignment:
Q  4 aagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaa 68  Q
    ||||||||| || |||||| | ||||||||||||||||  ||| |||||||||||||||||||||    
T  16197696 aagaagaagcaacaagactctgctatttttctgtgtcaaaactctgtcaaatcaaatagcgcaaa 16197760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 16152611 - 16152680
Alignment:
Q  97 tatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaaga 166  Q
    ||||||||||||||||| ||||  ||||| || |||| |||||| ||||||| |||||| ||||||||||    
T  16152611 tatcttagaaatcctaaagagttcgttcaattgttcagtttacattaccatttttaaatccaatgtaaga 16152680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24006473 - 24006693
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgc-aaaacacataggattttagctctgaaattcatat 99  Q
    ||||||||||| ||| ||  || | ||||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||| |   | || || |||     
T  24006473 ctgaagaagaactaacaactctctgctattttactgtgtcattattttgtcaaatcaattagcgcgaaaacacataggatttttgtattcaagtttatac 24006572  T
Q  100 cttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaat 199  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||  || |||||||| |    
T  24006573 cttagaaatcctaaagagtgtgttcatttgttcaatttacactaccattgttaaattcagtgtaaaaacaaatttacttgtttac--ttttgtaaacatt 24006670  T
Q  200 tagaaagtctctcgcctgcgtgc 222  Q
    |||||||||||||||||| ||||    
T  24006671 tagaaagtctctcgcctgtgtgc 24006693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 22638151 - 22638007
Alignment:
Q  41 attactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaa-tcctaaggagtctgttcattttttcaatttac 139  Q
    |||||| | ||||||| ||||||| ||||||| ||||||||| |   | || ||||||||||||||| |||||| |||| ||||||||| |||| |||||    
T  22638151 attactctatcaaatctaatagcggaaaacacttaggatttttgtattcaagttcatatcttagaaaatcctaaagagtttgttcatttgttcagtttac 22638052  T
Q  140 actaccattgttaaattcaatgtaagaataaattaacttgtttac 184  Q
     |||||||||| |||| ||||||||||| ||||| | ||||||||    
T  22638051 gctaccattgtcaaatccaatgtaagaacaaattgatttgtttac 22638007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 24897248 - 24897349
Alignment:
Q  113 aggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaaca-attagaaagtctct 211  Q
    |||||| ||||||||| |||| |||||||||||||||||||||||| || ||||| ||| |||||  |||||  ||||| |||||  |||||||||||||    
T  24897248 aggagtatgttcatttgttcattttacactaccattgttaaattcagtggaagaacaaactaactgttttactgttgtgcaaacattttagaaagtctct 24897347  T
Q  212 cg 213  Q
    ||    
T  24897348 cg 24897349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 24285720 - 24285800
Alignment:
Q  145 cattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcctgcgtgcatgag 227  Q
    ||||||||||| ||||||| ||| ||||||||| ||||||  ||||||||||| ||||||||| |||||| ||||||| ||||    
T  24285720 cattgttaaatccaatgtaggaaaaaattaactagtttac--ttgtgtaaacatttagaaagtatctcgcatgcgtgcttgag 24285800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 9756768 - 9756839
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacac 72  Q
    ||||||||||||||| |||||| |  ||||||| |||| ||  ||| |||||||||||||||||||| ||||    
T  9756768 ctgaagaagaagtaacaagactctgttatttttatgtgccaaaactctgtcaaatcaaatagcgcaagacac 9756839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 128846 - 128664
Alignment:
Q  49 gtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccatt 148  Q
    |||||||||||||||||||||||| ||| ||||||||| | || || ||||||||||||||||||||||||||||||||| |||| ||  ||||||||||    
T  128846 gtcaaatcaaatagcgcaaaacacttagaattttagctttcaagtttatatcttagaaatcctaaggagtctgttcatttgttcagtt--cactaccatt 128749  T
Q  149 gttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaatt-agaaagtctctcgcctgcgtgcatgagcatat 232  Q
    |||||||  | |||||||| ||| |||||||||| || ||||| ||||| || |||||||||||||||||||||| |||||||||    
T  128748 gttaaatctagtgtaagaaaaaagtaacttgtttgcagttgtgcaaacatttaagaaagtctctcgcctgcgtgcttgagcatat 128664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26338 - 26112
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatc 100  Q
    ||||||||||| ||| |||||| | | ||||| ||||||||||||| |||||||||||||||| |||||||| ||||||||||||  | || || |||||    
T  26338 ctgaagaagaa-taacaagactctgcaattttactgtgtcattactatgtcaaatcaaatagcccaaaacacttaggattttagcattcaagtttatatc 26240  T
Q  101 ttagaaatcct-aaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaat 199  Q
    ||||||||||| || |||| |||| |||| |||| |||||||| |||||||||||| || |||||||| ||||||| ||||||||  || |||||||| |    
T  26239 ttagaaatcctaaaagagtttgtttatttgttcagtttacactgccattgttaaatccagtgtaagaacaaattaatttgtttac--ttttgtaaacatt 26142  T
Q  200 tagaaagtctctcgcctgcgtgcatgagca 229  Q
    |||||| |||||||| || |||| ||||||    
T  26141 tagaaattctctcgcttgtgtgcttgagca 26112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 19143046 - 19143222
Alignment:
Q  49 gtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccatt 148  Q
    ||||||||||||| | |||||||| |||||||||     | || || |||||||||||||||||  |||||||||||||| ||||||||| |||||||||    
T  19143046 gtcaaatcaaataccacaaaacacttaggattttcttattcaagtttatatcttagaaatcctacagagtctgttcatttgttcaatttatactaccatt 19143145  T
Q  149 gttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcctgcgtgcatgag 227  Q
    ||||||| || |||||||| ||||||||||||||||| |  |||||||| |||||||||||||||||||||||| ||||    
T  19143146 gttaaatccagtgtaagaacaaattaacttgtttacagt--tgtaaacatttagaaagtctctcgcctgcgtgcttgag 19143222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 20742445 - 20742621
Alignment:
Q  49 gtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccatt 148  Q
    ||||||||||||| | |||||||| |||||||||     | || || |||||||||||||||||  |||||||||||||| ||||||||| |||||||||    
T  20742445 gtcaaatcaaataccacaaaacacttaggattttcttattcaagtttatatcttagaaatcctacagagtctgttcatttgttcaatttatactaccatt 20742544  T
Q  149 gttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcctgcgtgcatgag 227  Q
    ||||||| || |||||||| ||||||||||||||||| |  |||||||| |||||||||||||||||||||||| ||||    
T  20742545 gttaaatccagtgtaagaacaaattaacttgtttacagt--tgtaaacatttagaaagtctctcgcctgcgtgcttgag 20742621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 2641916 - 2642145
Alignment:
Q  4 aagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatctta 103  Q
    |||||||||||| ||||  || ||||||||||||| ||  ||| |||||||||||||||| |||||||| || |||||    ||  || || ||||||||    
T  2641916 aagaagaagtaacaaga--ttactatttttctgtgccaaaactctgtcaaatcaaatagctcaaaacacttaagatttattttc--aagtttatatctta 2642011  T
Q  104 gaaatcctaagg----agtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaaca-a 198  Q
    ||||||||||||    ||| ||||||||| ||||||||||||||||||||||||||  | |||||||| ||||||| |||||  || ||| | |||||      
T  2642012 gaaatcctaagggttgagtttgttcatttgttcaatttacactaccattgttaaatcaagtgtaagaacaaattaatttgttggcagttggggaaacatt 2642111  T
Q  199 ttagaaagtctctcgcctgcgtgcatgagcatat 232  Q
    |||||||||||| |||||||||||||||||||||    
T  2642112 ttagaaagtctcccgcctgcgtgcatgagcatat 2642145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 17918604 - 17918385
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatc 100  Q
    ||||||||||||||| |||||| |  ||||||||| || ||||||| | ||||||| ||||||||||||||| || ||||||| || |||| ||||||||    
T  17918604 ctgaagaagaagtaacaagactctgttatttttctatgccattactctatcaaatctaatagcgcaaaacacttaagattttatctttgaagttcatatc 17918505  T
Q  101 ttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaaca-at 199  Q
    | |||||||| || |||         |  |||| |||||||||||||||||||||  |||||||||| |||||||||| ||| || |||||||||||  |    
T  17918504 tcagaaatccgaaagag---------tagttcagtttacactaccattgttaaatctaatgtaagaacaaattaactt-tttgcagttgtgtaaacattt 17918415  T
Q  200 tagaaagtctctcgcctgcgtgcatgagca 229  Q
    || |||||||||| ||||||||| ||||||    
T  17918414 taaaaagtctctctcctgcgtgcttgagca 17918385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 4876337 - 4876104
Alignment:
Q  2 tgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatct 101  Q
    ||||||||||| || |||||||| ||||||||||||| ||  ||| || ||||||||||| |||| ||||| ||||||||     |  || || ||||||    
T  4876337 tgaagaagaagcaacaagactttgctatttttctgtgccaaaactctg-caaatcaaataacgcagaacacttaggatttatttac--aagtttatatct 4876241  T
Q  102 tagaaatcctaaggagtc----tgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaaca 197  Q
    |||||||||||||||||     ||||||||| |||| ||||||||| |||||||||||  | |||||||| |||||||||||||| || ||| | |||      
T  4876240 tagaaatcctaaggagtgagtatgttcatttgttcagtttacactatcattgttaaatatagtgtaagaacaaattaacttgtttgcagttggggaaaac 4876141  T
Q  198 a--ttagaaagtctctcgcctgcgtgcatgagcatat 232  Q
    |  ||||||||||||| | || ||||| |||||||||    
T  4876140 attttagaaagtctcttgtcttcgtgcttgagcatat 4876104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 2278055 - 2277847
Alignment:
Q  2 tgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatct 101  Q
    |||||||||||||| |||||||| ||||||| || || ||||||||| ||||||||||||| ||| |  ||  | ||||| |  ||  || || ||||||    
T  2278055 tgaagaagaagtaacaagactttactattttactatgccattactttctcaaatcaaatagggcagataactcaagattt-atttcc-aagtttatatct 2277958  T
Q  102 tagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaaca-att 200  Q
    | |||||| |||||||||||||||||| || | ||||  |||||||||||||||  | |||| ||| |||||||||||| | || ||||| |||||  ||    
T  2277957 tggaaatcataaggagtctgttcatttgttgagtttatcctaccattgttaaatcaagtgtaggaacaaattaacttgtctgcagttgtggaaacatttt 2277858  T
Q  201 agaaagtctct 211  Q
    |||||||||||    
T  2277857 agaaagtctct 2277847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9704419 - 9704649
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatc 100  Q
    |||||||||| | || ||||||  |||||||| ||||   |||||||| ||||||| ||||||||||||||||||||||||    | |  |||  |||||    
T  9704419 ctgaagaagatgaaacaagactcatctattttactgttatattactttttcaaatctaatagcgcaaaacacataggattt---attttcaatatatatc 9704515  T
Q  101 ttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaa-- 198  Q
    ||||||| |||||| ||||||||||||| |||| |||| |||| | |||||| |   | |||||||| | |||||||||||| || ||| | |||  |      
T  9704516 ttagaaaccctaagaagtctgttcatttgttcagtttaaactaactttgttagaaatagtgtaagaacatattaacttgtttgcagttggggaaaatatt 9704615  T
Q  199 ttagaaagtctctcgcctgcgtgcatgagcatat 232  Q
    ||||||||| ||||||||| |||| || ||||||    
T  9704616 ttagaaagtatctcgcctgtgtgcttgcgcatat 9704649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 17915464 - 17915327
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatc 100  Q
    ||||| ||||||||| || ||| |  ||||||  |||| ||||||| ||||||||| |||||||||||| || || |||||    ||   ||||||||||    
T  17915464 ctgaaaaagaagtaacaaaactctgatattttattgtgccattactctgtcaaatctaatagcgcaaaatacttatgatttattttc---aattcatatc 17915368  T
Q  101 ttagaaatcctaaggagtctgttcattttttcaatttacac 141  Q
    ||||||||||||| |||| ||||||||| || | |||||||    
T  17915367 ttagaaatcctaatgagtatgttcatttgtttagtttacac 17915327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 19569836 - 19570066
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatc 100  Q
    ||||| ||||||||| |||||| | ||||||| ||||||||||||| ||||||||||||||| ||||||||| | |||| |    ||  || |  |||||    
T  19569836 ctgaaaaagaagtaacaagactctactattttactgtgtcattactctgtcaaatcaaatagtgcaaaacacttgggatatattttc--aagtctatatc 19569933  T
Q  101 ttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaaca-at 199  Q
    ||| |||||||||||||| ||||||||| ||||   |||||||||||||||||||  | |||||||| |||||||||||||| || ||||| |||||  |    
T  19569934 ttaaaaatcctaaggagtttgttcatttgttcagggtacactaccattgttaaatctagtgtaagaacaaattaacttgtttgcagttgtgcaaacattt 19570033  T
Q  200 tagaaagtctctcgcctgcgtgcatgagcatat 232  Q
    ||||||||||||||||| ||||| |||| ||||    
T  19570034 tagaaagtctctcgcctacgtgcttgagtatat 19570066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 9824104 - 9823913
Alignment:
Q  27 tatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcat 126  Q
    |||||| ||||||||||||| ||| ||| |||||| | |||||||| |||||||||| || | || || |||||||||||||| ||| |||| |||||||    
T  9824104 tattttactgtgtcattactctgtgaaa-caaataccacaaaacacttaggattttatctttcaagtttatatcttagaaatcttaaagagtttgttcat 9824006  T
Q  127 tttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcctgcgtgcatga 226  Q
    |||        ||||||||||||||||||  | || ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  9824005 ttt--------acactaccattgttaaatctagtgcaagaaaaaattaacttgtttac--ttgtgtaaacaattagaaagtctctcgcctgcgtgcttga 9823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 232
Target Start/End: Complemental strand, 18304206 - 18304041
Alignment:
Q  69 acacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaat 168  Q
    |||| ||||||||||||| |||| || |||||||||||||| ||| |||| |||||||||  ||| |||||||||||||||||||||  ||||| ||||     
T  18304206 acacttaggattttagctttgaagtttatatcttagaaatcataaagagtgtgttcatttgatcagtttacactaccattgttaaatcaaatgttagaac 18304107  T
Q  169 aaattaacttgtttacaattgtg--taaacaattagaaagtctctcgcctgcgtgcatgagcatat 232  Q
    |||||||||||||| || ||| |   ||| | ||||||||||||||||||| |||| |||| ||||    
T  18304106 aaattaacttgttttcagttggggcaaaaaatttagaaagtctctcgcctgtgtgcttgagtatat 18304041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 21216660 - 21216782
Alignment:
Q  4 aagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatctta 103  Q
    ||||||||||||||||||| | ||||||| ||||| ||||||| |||||||||||||| |||||||||| ||||||||    | | || || ||||||||    
T  21216660 aagaagaagtaataagactctactattttcctgtgccattactctgtcaaatcaaataacgcaaaacacctaggattt--attttcaagtttatatctta 21216757  T
Q  104 gaaatcctaaggagtctgttcattt 128  Q
    |||||||||| ||||||||||||||    
T  21216758 gaaatcctaatgagtctgttcattt 21216782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 22748225 - 22748117
Alignment:
Q  121 gttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcctgcgt 220  Q
    |||||||| |||| ||||||||||||||||||||| || |||||||| ||||||| ||||||||| ||||| ||||||||| ||||| |||| ||| |||    
T  22748225 gttcatttgttcagtttacactaccattgttaaatccagtgtaagaacaaattaatttgtttacatttgtgcaaacaattataaagtatctcacctacgt 22748126  T
Q  221 gcatgagca 229  Q
    || ||||||    
T  22748125 gcttgagca 22748117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 23110194 - 23110029
Alignment:
Q  10 aagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatc 109  Q
    |||||| |||||| | ||||||| || ||||||| || ||| ||||||||| | | ||||||| ||||||||    ||  || ||| |||| ||||||||    
T  23110194 aagtaacaagactctactattttactatgtcatttctctgttaaatcaaattgaggaaaacacttaggatttattttc--aagttcgtatcgtagaaatc 23110097  T
Q  110 ctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaact 177  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||||  | |||||||| |||||||||    
T  23110096 ctaaggagtctgttcatttgttcaatttacactagcattgtaaaatctagtgtaagaacaaattaact 23110029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 16525141 - 16525227
Alignment:
Q  96 atatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgttt 182  Q
    ||||||| ||||||||||||||| ||||||||| |||| |||||| |||||||||||||| || |||||||| ||||||| ||||||    
T  16525141 atatctttgaaatcctaaggagtttgttcatttgttcagtttacattaccattgttaaatccagtgtaagaacaaattaagttgttt 16525227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 21391465 - 21391533
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaa 69  Q
    |||||||||||| || |||||| | ||||||||||||| ||  ||| ||| ||||||||||||||||||    
T  21391465 ctgaagaagaagcaacaagactctgctatttttctgtgccacaactctgttaaatcaaatagcgcaaaa 21391533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 28760373 - 28760303
Alignment:
Q  2 tgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacac 72  Q
    ||||||||||  || |||||| |  ||||||||||||  |  |||||||||||||||||||||||||||||    
T  28760373 tgaagaagaaacaacaagactctgatatttttctgtgcgaaaactttgtcaaatcaaatagcgcaaaacac 28760303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 26013584 - 26013527
Alignment:
Q  13 taataagacttttctatttttctgtgtcattactttgtc-aaatcaaatagcgcaaaa 69  Q
    |||||||||| | ||||||| ||||||||||||| || | ||||||||||||||||||    
T  26013584 taataagactctgctattttactgtgtcattactctgccaaaatcaaatagcgcaaaa 26013527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 1851 - 2080
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatc 100  Q
    |||||| |||||||| |||||||| | ||||| || || ||||||| | |||||||||||| | |||||||| || ||||||    || || || |||||    
T  1851 ctgaagcagaagtaacaagactttgcaattttactatgccattactctatcaaatcaaataacacaaaacacttatgattttcttactcaagtttatatc 1950  T
Q  101 ttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaatt 200  Q
    ||||| |||||||| ||||||||||||| || | |||||| |||||||||||||| || |||||||| ||||||| ||||||||||   |||||||||||    
T  1951 ttagacatcctaagtagtctgttcatttgttaagtttacattaccattgttaaatccagtgtaagaacaaattaatttgtttacaa--ctgtaaacaatt 2048  T
Q  201 agaaagtctctcgcctgcgtgcatgagcatat 232  Q
    ||||| |||||| | || |||| |||||||||    
T  2049 agaaactctctcacttgtgtgcttgagcatat 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 23433153 - 23433330
Alignment:
Q  3 gaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatctt 102  Q
    ||||||||||||| |||||| | |||||||||| || ||||||||||||||||||||||  ||||||| | ||||||||    ||  || || |||||||    
T  23433153 gaagaagaagtaacaagactctgctatttttctatgccattactttgtcaaatcaaataatgcaaaacccttaggatttattttc--aagtttatatctt 23433250  T
Q  103 agaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgttt 182  Q
    ||||||||||||||||||||||| || |||| ||||||||| |||||||||||  | |||||||| ||||||||||||||    
T  23433251 agaaatcctaaggagtctgttcaattgttcagtttacactatcattgttaaatctagtgtaagaacaaattaacttgttt 23433330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 18565881 - 18565677
Alignment:
Q  27 tatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcat 126  Q
    |||||||||||| ||   ||||||||||||||||| |||||||||| ||||||||    ||  || || |||||||||||||||||||||||||||||||    
T  18565881 tatttttctgtgccaaatctttgtcaaatcaaataacgcaaaacacttaggatttattttc--aagtttatatcttagaaatcctaaggagtctgttcat 18565784  T
Q  127 tttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaaca-attagaaagtctctcgcctgcgtgcatg 225  Q
    || |||| |||||||||||||||||||||  |  ||||||| |||||||||| |||  | ||||| |||||  |||||||||||| ||||||| ||| ||    
T  18565783 ttgttcagtttacactaccattgttaaatcaagagtaagaacaaattaacttttttgtagttgtgcaaacattttagaaagtctcacgcctgcatgcttg 18565684  T
Q  226 agcatat 232  Q
    |||||||    
T  18565683 agcatat 18565677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 20267508 - 20267649
Alignment:
Q  74 taggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaatt 173  Q
    ||||||||||||| |||| || ||||||||||||| || |||||| ||||||||| || | |||||||||||||||||||||  | |||| ||| |||||    
T  20267508 taggattttagctttgaagtttatatcttagaaatacttaggagtttgttcatttgtttagtttacactaccattgttaaatcaagtgtacgaacaaatt 20267607  T
Q  174 aacttgtttacaattgtgtaaaca-attagaaagtctctcgc 214  Q
    ||||||||| || ||||| |||||  ||||||||||||||||    
T  20267608 aacttgttttcagttgtgcaaacattttagaaagtctctcgc 20267649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 21054137 - 21054278
Alignment:
Q  74 taggattttagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaatt 173  Q
    ||||||||||||| |||| || ||||||||||||| || |||||| ||||||||| || | |||||||||||||||||||||  | |||| ||| |||||    
T  21054137 taggattttagctttgaagtttatatcttagaaatacttaggagtttgttcatttgtttagtttacactaccattgttaaatcaagtgtacgaacaaatt 21054236  T
Q  174 aacttgtttacaattgtgtaaaca-attagaaagtctctcgc 214  Q
    ||||||||| || ||||| |||||  ||||||||||||||||    
T  21054237 aacttgttttcagttgtgcaaacattttagaaagtctctcgc 21054278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 13645131 - 13644918
Alignment:
Q  17 aagacttttctattttt-ctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaagg 115  Q
    |||||| | |||||||| ||||||||||||| |||||||||||||||| |||||||| ||||||||| |   | || || ||||||||||||| |||| |    
T  13645131 aagactctactatttttactgtgtcattactctgtcaaatcaaatagcacaaaacacttaggatttttgtattcaagtttatatcttagaaatgctaaag 13645032  T
Q  116 agtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcc 215  Q
    ||| ||||||| | || | |||||||||||||||||||||    |||||||| ||||| | ||||||||   | |||||||| |||||| || |||| ||    
T  13645031 agtatgttcatgtgtttagtttacactaccattgttaaatctggtgtaagaacaaattgatttgtttac--ctttgtaaacatttagaacgtatctcacc 13644934  T
Q  216 tgcgtgcatgagcata 231  Q
    ||||||| ||| ||||    
T  13644933 tgcgtgcttgaacata 13644918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 13745556 - 13745343
Alignment:
Q  17 aagacttttctattttt-ctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaagg 115  Q
    |||||| | |||||||| ||||||||||||| |||||||||||||||| |||||||| ||||||||| |   | || || ||||||||||||| |||| |    
T  13745556 aagactctactatttttactgtgtcattactctgtcaaatcaaatagcacaaaacacttaggatttttgtattcaagtttatatcttagaaatgctaaag 13745457  T
Q  116 agtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcc 215  Q
    ||| ||||||| | || | |||||||||||||||||||||    |||||||| ||||| | ||||||||   | |||||||| |||||| || |||| ||    
T  13745456 agtatgttcatgtgtttagtttacactaccattgttaaatctggtgtaagaacaaattgatttgtttac--ctttgtaaacatttagaacgtatctcacc 13745359  T
Q  216 tgcgtgcatgagcata 231  Q
    ||||||| ||| ||||    
T  13745358 tgcgtgcttgaacata 13745343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 21838721 - 21838611
Alignment:
Q  120 tgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaaca-attagaaagtctctcgcctgc 218  Q
    ||||||||| |||| |||||||||||||||||||||  | |||||||| ||||||||||||||||| |||||||||||  ||||||||||||| || ||     
T  21838721 tgttcatttgttcagtttacactaccattgttaaatctagtgtaagaacaaattaacttgtttacagttgtgtaaacattttagaaagtctcttgcatgt 21838622  T
Q  219 gtgcatgagca 229  Q
    |||| ||||||    
T  21838621 gtgcttgagca 21838611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 5828783 - 5828600
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatc 100  Q
    |||||||||||| || |||||| | ||| |||| |||| ||  ||| ||||| |||||||| |||||||||| || |||||    ||  || || |||||    
T  5828783 ctgaagaagaagcaacaagactctgctacttttttgtgccaaaactctgtcatatcaaataacgcaaaacacttacgatttattttc--aagtttatatc 5828686  T
Q  101 ttagaaatcctaaggagt----ctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgttt 182  Q
    ||||||||||||||||||    |||||||||| || | ||||||||| |||||||||||  | |||||||| ||||||||||||||    
T  5828685 ttagaaatcctaaggagtgaatctgttcatttgtttagtttacactatcattgttaaatatagtgtaagaacaaattaacttgttt 5828600  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 5826184 - 5826001
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatc 100  Q
    |||||||||||| || |||||| | ||| |||| |||| ||  ||| ||||| |||||||| |||||||||| || |||||    ||  || || |||||    
T  5826184 ctgaagaagaagcaacaagactctgctacttttttgtgccaaaactctgtcatatcaaataacgcaaaacacttacgatttattttc--aagtttatatc 5826087  T
Q  101 ttagaaatcctaaggagt----ctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgttt 182  Q
    ||||||||||||||||||    ||||||| || || | ||||||||| |||||||||||  | |||||||| ||||||||||||||    
T  5826086 ttagaaatcctaaggagtgaatctgttcaattgtttagtttacactatcattgttaaatatagtgtaagaacaaattaacttgttt 5826001  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24987675 - 24987746
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacac 72  Q
    |||||||||||| || |||||| | ||||||| | ||||||||||| ||||||||| |||||||||||||||    
T  24987675 ctgaagaagaagcaacaagactctgctattttaccgtgtcattactctgtcaaatctaatagcgcaaaacac 24987746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 5825736 - 5825600
Alignment:
Q  48 tgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatcttagaaatcctaaggagt----ctgttcattttttcaatttacacta 143  Q
    |||||||||||||| |||||||||| || |||||    ||  || || |||||||||||||||||||||||    ||||||| || || | |||||||||    
T  5825736 tgtcaaatcaaataacgcaaaacacttacgatttattttc--aagtttatatcttagaaatcctaaggagtgaatctgttcaattgtttagtttacacta 5825639  T
Q  144 ccattgttaaattcaatgtaagaataaattaacttgttt 182  Q
     |||||||||||  | |||||||| ||||||||||||||    
T  5825638 tcattgttaaatatagtgtaagaacaaattaacttgttt 5825600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 22316930 - 22317109
Alignment:
Q  2 tgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatct 101  Q
    |||||||||||||| |||||| | |||||||||||||||| |||| |||||||||||||||| ||||| || |||| |||||  | | || || ||||||    
T  22316930 tgaagaagaagtaaaaagactctgctatttttctgtgtcaatactctgtcaaatcaaatagcacaaaatacttagg-ttttatttttcaagtttatatct 22317028  T
Q  102 tagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgttt 182  Q
    ||||||||||||||||||| ||||||| || | |||||||||||||| ||||||  | ||||| || ||||||||||||||    
T  22317029 tagaaatcctaaggagtctattcatttgtttagtttacactaccattattaaatcaagtgtaataacaaattaacttgttt 22317109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 8911484 - 8911296
Alignment:
Q  40 cattactttgtcaaatcaaatagcgcaaaacacataggattt-tagctctgaaattcatatcttagaaatcctaaggagtctgttcattttttcaattta 138  Q
    ||||||||| |||||||||||||| ||||| || |||||||| ||  | |||| || ||||||||||||||||| | ||||||||||||  |||| ||||    
T  8911484 cattactttatcaaatcaaatagcacaaaatacttaggatttctatat-tgaagtttatatcttagaaatcctatg-agtctgttcattagttcatttta 8911387  T
Q  139 cactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaattagaaagtctctcgcctgcgtgcatgagcata 231  Q
     ||||||| || ||||| ||||||||||| ||||||||||||||||  |  |||||||| |||||||||||||||||| | ||| ||||||||    
T  8911386 aactaccactgataaatccaatgtaagaacaaattaacttgtttac--tgttgtaaacatttagaaagtctctcgcctacatgcttgagcata 8911296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 39980880 - 39981017
Alignment:
Q  96 atatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaa 195  Q
    |||| |||||||| ||||||| | | ||||||| |||| ||||||||| | |||||||||  ||||||||||||||||||||||||| || ||||| |||    
T  39980880 atattttagaaattctaaggaatttattcatttgttcagtttacactatcgttgttaaatctaatgtaagaataaattaacttgtttgcagttgtgcaaa 39980979  T
Q  196 ca-attagaaagtctctcgcctgcgtgcatgagcatat 232  Q
    ||  |||||||||||||||||||||||| |||||||||    
T  39980980 cattttagaaagtctctcgcctgcgtgcttgagcatat 39981017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13570686 - 13570916
Alignment:
Q  1 ctgaagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattttagctctgaaattcatatc 100  Q
    |||||||||| | || ||||||  |||||||| ||||   |||||||| ||||||| ||||||||||||||||||||||||    | |  |||  |||||    
T  13570686 ctgaagaagatgaaacaagactcatctattttactgttatattactttttcaaatctaatagcgcaaaacacataggattt---attttcaatatatatc 13570782  T
Q  101 ttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaacaa-- 198  Q
    ||||||| |||||| ||||||||||||| |||| |||| |||| | |||||| |   | |||||||| | |||||||||||| || ||| | |||  |      
T  13570783 ttagaaaccctaagaagtctgttcatttgttcagtttaaactaactttgttagaaatagtgtaagaacatattaacttgtttgcagttggggaaaatatt 13570882  T
Q  199 ttagaaagtctctcgcctgcgtgcatgagcatat 232  Q
    ||||||||| ||||||||| |||| || ||||||    
T  13570883 ttagaaagtatctcgcctgtgtgcttgcgcatat 13570916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 14099 - 13979
Alignment:
Q  96 atatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaataaattaacttgtttacaattgtgtaaa 195  Q
    |||||| ||||||| ||| || ||||||||||| ||||||||||||||||||||||||||  | | |||||| ||||| ||||||||||| |  ||||||    
T  14099 atatctcagaaatcttaaagattctgttcatttgttcaatttacactaccattgttaaataaagtataagaacaaatttacttgtttacagt--tgtaaa 14002  T
Q  196 caattagaaagtctctcgcctgc 218  Q
    || ||||||| ||||||||||||    
T  14001 catttagaaattctctcgcctgc 13979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 17791 - 17848
Alignment:
Q  96 atatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaa 153  Q
    |||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||    
T  17791 atatcttagaaatcttaaagattctgttcatttgttcaatttacactaccattgttaa 17848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 2475 - 2398
Alignment:
Q  4 aagaagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggattt 81  Q
    |||||||| ||| |||||||| ||||||| ||||||||||||| ||||||||||||||| | ||||||| ||| ||||    
T  2475 aagaagaaataacaagactttgctattttactgtgtcattactctgtcaaatcaaatagtgaaaaacacttagaattt 2398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 79199 - 79144
Alignment:
Q  25 tctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacacataggatt 80  Q
    |||||||||||||| ||  | | ||||||||||||||||||||||||| |||||||    
T  79199 tctatttttctgtgccaaaaatctgtcaaatcaaatagcgcaaaacacttaggatt 79144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 11826 - 11753
Alignment:
Q  160 tgtaagaataaattaacttgtttacaattgtgtaaacaatt-agaaagtctctcgcctgcgtgcatgagcatat 232  Q
    |||||||| |||||||||||||| || ||| ||||| | || | ||||| |||||||||||||| |||||||||    
T  11826 tgtaagaacaaattaacttgtttgcagttgggtaaagattttataaagtttctcgcctgcgtgcttgagcatat 11753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 57168 - 57233
Alignment:
Q  7 aagaagtaataagacttttctatttttctgtgtcattactttgtcaaatcaaatagcgcaaaacac 72  Q
    ||||| ||| |||||| | ||||||||||||| ||  ||| |||||||||||||||| ||||||||    
T  57168 aagaattaacaagactatgctatttttctgtgccaaaactctgtcaaatcaaatagcacaaaacac 57233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 25535 - 25406
Alignment:
Q  97 tatcttagaaatcctaaggagtctgttcattttttcaatttacactaccattgttaaattcaatgtaagaa-taaattaacttgtttacaattgtgtaaa 195  Q
    ||||||||||||| ||| || | ||||||||| |||| ||||||  |||||| ||||||  | ||||||||  ||||| ||||||||||  |  ||||||    
T  25535 tatcttagaaatcttaaagattatgttcatttgttcagtttacaacaccattattaaatcaagtgtaagaaccaaatttacttgtttaccgt--tgtaaa 25438  T
Q  196 caattagaaagtctctcgcctgcgtgcatgag 227  Q
    |  ||||||| |||||||| ||||||| ||||    
T  25437 cgtttagaaattctctcgcttgcgtgcttgag 25406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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