View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_28 (Length: 237)
Name: NF19414_low_28
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 1543325 - 1543114
Alignment:
| Q |
15 |
attaaccactaacatttgtctataaaccaatttggtacttagttgatataattagaaacaagagaaattacctccataatctttctccttcacattcaaa |
114 |
Q |
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| T |
1543325 |
attaaccactaacatttgtctataaaccaatttggtacttagttgatataattagaaacaagagaaattacctccataatctttctccttcacattcaaa |
1543226 |
T |
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| Q |
115 |
taagaatcaggaagaacccaccgaactttgggtagttctgaaaatttgaaaaacaggaaattaaaaccctttatggtatatagtatataaaagacaaagt |
214 |
Q |
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| T |
1543225 |
taagaatcaggaagaacccaccgaactttgggcagttctgaaaatttgaaaaacaggaaattaaaaccctttatggtatatagtatataaaagacaaagt |
1543126 |
T |
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| Q |
215 |
ttaatgagaatt |
226 |
Q |
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| T |
1543125 |
ttaatgagaatt |
1543114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 32425391 - 32425269
Alignment:
| Q |
72 |
acaagagaaattacctccataatctttctccttcacattcaaataagaatcaggaagaacccaccgaactttgggtagttctgaaaatttgaaaaacagg |
171 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
32425391 |
acaagagaaattacctccataatctttctcctccacattcaaataagaatcaggaagaacccaccgaactttgggaagttctgcaaatttgaaaaacagg |
32425292 |
T |
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| Q |
172 |
aaattaaaaccctttatggtata |
194 |
Q |
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| T |
32425291 |
aaattaaaaccctttatggtata |
32425269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 32420694 - 32420622
Alignment:
| Q |
82 |
ttacctccataatctttctccttcacattcaaataagaatcaggaagaacccaccgaactttgggtagttctg |
154 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
32420694 |
ttacctccataatctttctccctcacattcaaataagaatcaggaagaacccatcgaaccttgggcagttctg |
32420622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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