View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_3 (Length: 609)
Name: NF19414_low_3
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 61 - 592
Target Start/End: Complemental strand, 12001683 - 12001143
Alignment:
| Q |
61 |
aacaaatgaggaccacaaaattggagagcaagcaaatagatattttttgagtgagcaaaattaaaaacactataccaaatttgaccnnnnnnn-tcggaa |
159 |
Q |
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| T |
12001683 |
aacaaatgaggacaacaatattggagagcaagcaaatagatattttttgagtgaacacaattaaaaagactataccaaatttgaccaaaaaaaatcggaa |
12001584 |
T |
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| Q |
160 |
ttaaagaataagtgatgattattcgactctttaccacaaccacatggagataacaaaacgttagaattcagtattcttcttc------atgccaagtaat |
253 |
Q |
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| T |
12001583 |
ttaaagaataagtgatgattattcgactctttaccacaaccacatggaaataacaaaacgttagaattcagtattcttcttcttcttcatgccaagtaat |
12001484 |
T |
|
| Q |
254 |
ctttagtcagaatcttattgatctgaaacctccaaacaaatataaaaacttttagcaacatttgacaatgata----acgaatgcatcaatactggacaa |
349 |
Q |
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| T |
12001483 |
ctttagtcggaatcttattgatttgaaacctccaaacaaata-acaaacttttagcaacacttgacaatgatagataacgaatgcaccaatattggacaa |
12001385 |
T |
|
| Q |
350 |
tacactcaaaatcatctctctttttcgcttatatatattttcttaatatgtgtaatatgaaaaataaactcagttattttacgataacgggagtataagt |
449 |
Q |
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| T |
12001384 |
tgcattcaaaatcatctctctttttcacttatatatattttcttaatatgtgtaatatgaaaaataaactcagttattttactatgacgggagtataagt |
12001285 |
T |
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| Q |
450 |
tatctgatataccaaatttttaaaagttcaacttgatatcaattgannnnnnnaatttcttgtcaataaaggctaactcagttgataaggagttgactca |
549 |
Q |
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| T |
12001284 |
tatttgatataccaaaattttaaaagttcaacttgatatcaattgatgtttttaatttcttgtcaataaa-gttaactcagttgataaggagttgattca |
12001186 |
T |
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| Q |
550 |
tactctataagtatgtgagttcaactctcaccgttagcgtaag |
592 |
Q |
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| T |
12001185 |
tactctacaagtatgtgagttcaactctcattgtcagcgtaag |
12001143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 12001819 - 12001764
Alignment:
| Q |
10 |
aagaatataatacaaaaagtcataaacgaaaaagcaagacaaaatattaataacaa |
65 |
Q |
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| T |
12001819 |
aagaatataatacaaaaagtcataaacgaaaaagcaagacaaaacattaataacaa |
12001764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 576
Target Start/End: Complemental strand, 4763246 - 4763180
Alignment:
| Q |
510 |
tgtcaataaaggctaactcagttgataaggagttgactcatactctataagtatgtgagttcaactc |
576 |
Q |
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| T |
4763246 |
tgtcaatgaaggttgactcagttaataaagagttgactgatactctataagggtgtgaattcaactc |
4763180 |
T |
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