View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19414_low_30 (Length: 233)

Name: NF19414_low_30
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19414_low_30
NF19414_low_30
[»] chr5 (35 HSPs)
chr5 (20-121)||(19655154-19655255)
chr5 (20-121)||(291093-291194)
chr5 (21-121)||(16439135-16439235)
chr5 (38-121)||(29699381-29699464)
chr5 (21-121)||(12913800-12913900)
chr5 (20-109)||(19598328-19598417)
chr5 (51-121)||(3899866-3899936)
chr5 (51-121)||(16971171-16971241)
chr5 (21-85)||(2953267-2953331)
chr5 (21-117)||(28818923-28819010)
chr5 (21-117)||(3180105-3180200)
chr5 (21-85)||(16971221-16971285)
chr5 (21-85)||(29699444-29699508)
chr5 (18-113)||(39031200-39031295)
chr5 (51-117)||(16802471-16802537)
chr5 (23-121)||(30117869-30117967)
chr5 (63-121)||(38134414-38134472)
chr5 (21-85)||(291174-291238)
chr5 (73-121)||(2953239-2953287)
chr5 (21-85)||(3899916-3899980)
chr5 (21-85)||(19655235-19655299)
chr5 (21-85)||(1638454-1638518)
chr5 (61-121)||(2093978-2094038)
chr5 (23-83)||(30117827-30117887)
chr5 (66-121)||(2935871-2935926)
chr5 (63-121)||(26662438-26662496)
chr5 (63-121)||(26934033-26934091)
chr5 (21-85)||(2093934-2093998)
chr5 (21-80)||(2356354-2356412)
chr5 (23-58)||(39777050-39777085)
chr5 (27-85)||(12913880-12913938)
chr5 (23-85)||(28818994-28819056)
chr5 (20-49)||(2953203-2953232)
chr5 (73-121)||(228399-228447)
chr5 (21-49)||(19598435-19598463)
[»] chr8 (25 HSPs)
chr8 (20-121)||(35441010-35441111)
chr8 (20-121)||(5033157-5033258)
chr8 (21-119)||(5667094-5667192)
chr8 (20-121)||(10086753-10086854)
chr8 (20-121)||(8243429-8243530)
chr8 (20-121)||(33841632-33841733)
chr8 (21-121)||(34229638-34229738)
chr8 (20-121)||(45191168-45191269)
chr8 (21-117)||(8796419-8796515)
chr8 (20-85)||(22649841-22649906)
chr8 (21-85)||(5033238-5033302)
chr8 (20-94)||(2581821-2581895)
chr8 (52-114)||(4958627-4958689)
chr8 (51-109)||(39850982-39851040)
chr8 (28-85)||(10086834-10086891)
chr8 (21-85)||(33841588-33841652)
chr8 (21-85)||(35440966-35441030)
chr8 (23-117)||(43844516-43844608)
chr8 (63-117)||(6296644-6296698)
chr8 (20-85)||(5667174-5667239)
chr8 (73-117)||(31159900-31159944)
chr8 (69-113)||(34541852-34541896)
chr8 (21-80)||(45191124-45191183)
chr8 (87-121)||(35031655-35031689)
chr8 (18-79)||(6296688-6296749)
[»] chr1 (45 HSPs)
chr1 (20-121)||(29179638-29179739)
chr1 (20-121)||(37155042-37155143)
chr1 (20-121)||(48993958-48994059)
chr1 (21-121)||(1091585-1091685)
chr1 (18-113)||(36290456-36290551)
chr1 (21-121)||(17127605-17127705)
chr1 (21-121)||(32540789-32540889)
chr1 (23-117)||(44706829-44706923)
chr1 (20-121)||(5995365-5995466)
chr1 (20-121)||(48498411-48498512)
chr1 (21-121)||(4608993-4609093)
chr1 (21-121)||(9157307-9157407)
chr1 (51-121)||(29371395-29371465)
chr1 (31-121)||(45728294-45728384)
chr1 (64-121)||(741543-741600)
chr1 (20-85)||(46931993-46932058)
chr1 (20-121)||(8337892-8337984)
chr1 (21-100)||(21630039-21630118)
chr1 (63-121)||(46333987-46334045)
chr1 (63-121)||(47303434-47303492)
chr1 (21-85)||(48993914-48993978)
chr1 (51-121)||(34062236-34062306)
chr1 (23-95)||(28395636-28395708)
chr1 (63-121)||(15220850-15220908)
chr1 (23-85)||(15220888-15220950)
chr1 (63-121)||(33219612-33219670)
chr1 (21-85)||(5995446-5995510)
chr1 (73-121)||(28928820-28928868)
chr1 (21-85)||(29179594-29179658)
chr1 (82-121)||(1819530-1819569)
chr1 (63-121)||(38674546-38674602)
chr1 (51-121)||(49444954-49445022)
chr1 (67-109)||(5694942-5694984)
chr1 (31-85)||(32540755-32540809)
chr1 (51-121)||(48604988-48605058)
chr1 (21-82)||(46932062-46932122)
chr1 (21-85)||(17127561-17127625)
chr1 (21-57)||(49444910-49444946)
chr1 (21-76)||(31342260-31342315)
chr1 (21-75)||(12441042-12441096)
chr1 (21-121)||(19711221-19711319)
chr1 (20-49)||(49445015-49445044)
chr1 (21-85)||(29371445-29371509)
chr1 (21-85)||(33219650-33219714)
chr1 (21-49)||(48823891-48823919)
[»] chr4 (40 HSPs)
chr4 (23-121)||(23444310-23444408)
chr4 (20-121)||(6271698-6271799)
chr4 (20-117)||(51265441-51265538)
chr4 (20-113)||(30861823-30861916)
chr4 (21-121)||(35682163-35682263)
chr4 (38-121)||(47661856-47661939)
chr4 (51-121)||(40789206-40789276)
chr4 (21-121)||(26186057-26186155)
chr4 (18-117)||(47762602-47762701)
chr4 (63-121)||(52028588-52028646)
chr4 (20-121)||(42375015-42375107)
chr4 (63-121)||(55090037-55090095)
chr4 (20-121)||(47404626-47404718)
chr4 (51-119)||(53954637-53954705)
chr4 (23-85)||(47661919-47661981)
chr4 (21-85)||(3862623-3862687)
chr4 (21-85)||(3871380-3871444)
chr4 (21-85)||(6271779-6271843)
chr4 (21-85)||(42375087-42375151)
chr4 (73-117)||(45591455-45591499)
chr4 (73-121)||(50384146-50384194)
chr4 (21-76)||(30709986-30710041)
chr4 (42-121)||(31532730-31532809)
chr4 (23-85)||(23444268-23444330)
chr4 (73-121)||(24006111-24006159)
chr4 (73-121)||(25818414-25818462)
chr4 (21-121)||(44379927-44380027)
chr4 (21-85)||(51265522-51265586)
chr4 (27-85)||(53954687-53954745)
chr4 (80-121)||(31430502-31430543)
chr4 (20-85)||(38714900-38714965)
chr4 (77-121)||(28693964-28694008)
chr4 (27-85)||(35682243-35682301)
chr4 (21-78)||(5048884-5048941)
chr4 (20-49)||(31430562-31430591)
chr4 (21-49)||(24006166-24006194)
chr4 (21-49)||(31430467-31430495)
chr4 (23-79)||(44380013-44380069)
chr4 (21-49)||(47404591-47404619)
chr4 (21-49)||(50384111-50384139)
[»] chr7 (26 HSPs)
chr7 (20-121)||(11016865-11016966)
chr7 (20-121)||(34854736-34854837)
chr7 (20-121)||(41018269-41018370)
chr7 (20-121)||(15027538-15027639)
chr7 (20-117)||(38975801-38975898)
chr7 (26-121)||(27028834-27028929)
chr7 (20-121)||(4290541-4290642)
chr7 (20-104)||(45231908-45231992)
chr7 (51-121)||(7671952-7672022)
chr7 (21-85)||(11016946-11017010)
chr7 (42-109)||(22764753-22764820)
chr7 (51-121)||(29053355-29053425)
chr7 (21-79)||(4290628-4290686)
chr7 (27-112)||(30217504-30217588)
chr7 (28-121)||(41945859-41945952)
chr7 (21-85)||(42628372-42628436)
chr7 (63-121)||(42628334-42628392)
chr7 (63-121)||(48000776-48000834)
chr7 (21-81)||(48000818-48000878)
chr7 (21-91)||(27028725-27028795)
chr7 (20-85)||(48000690-48000755)
chr7 (86-121)||(48000735-48000770)
chr7 (63-121)||(10419497-10419555)
chr7 (63-121)||(4649359-4649419)
chr7 (20-49)||(29053418-29053447)
chr7 (21-49)||(45231860-45231888)
[»] chr3 (29 HSPs)
chr3 (20-121)||(41752960-41753061)
chr3 (23-121)||(43139750-43139848)
chr3 (23-121)||(47492088-47492186)
chr3 (21-121)||(30734443-30734543)
chr3 (21-121)||(33689173-33689273)
chr3 (20-117)||(51046118-51046215)
chr3 (141-220)||(25560691-25560770)
chr3 (63-121)||(47677296-47677354)
chr3 (21-121)||(18321648-18321748)
chr3 (51-121)||(1801487-1801557)
chr3 (67-121)||(29031755-29031809)
chr3 (63-121)||(30476515-30476573)
chr3 (28-117)||(30580801-30580890)
chr3 (28-121)||(50524706-50524799)
chr3 (21-85)||(1801443-1801507)
chr3 (21-85)||(41753041-41753105)
chr3 (21-117)||(55223229-55223325)
chr3 (51-104)||(39385746-39385799)
chr3 (20-117)||(50549971-50550068)
chr3 (21-85)||(45103106-45103170)
chr3 (21-73)||(50524791-50524843)
chr3 (38-85)||(47492061-47492108)
chr3 (91-121)||(45103150-45103180)
chr3 (21-54)||(1272557-1272590)
chr3 (20-49)||(1801599-1801628)
chr3 (30-106)||(39057015-39057089)
chr3 (21-85)||(30580753-30580817)
chr3 (21-85)||(30734399-30734463)
chr3 (21-49)||(49414527-49414555)
[»] chr2 (32 HSPs)
chr2 (20-121)||(16514420-16514521)
chr2 (20-117)||(29508736-29508833)
chr2 (38-121)||(15011294-15011377)
chr2 (54-121)||(14470633-14470700)
chr2 (51-122)||(29925610-29925681)
chr2 (51-121)||(2893990-2894060)
chr2 (51-121)||(6217265-6217335)
chr2 (63-121)||(14229394-14229452)
chr2 (38-121)||(6721965-6722048)
chr2 (26-109)||(9173034-9173117)
chr2 (51-121)||(2828611-2828681)
chr2 (21-85)||(6722028-6722092)
chr2 (22-85)||(6217222-6217285)
chr2 (63-117)||(38933626-38933680)
chr2 (64-121)||(37961746-37961803)
chr2 (21-85)||(16514501-16514565)
chr2 (21-121)||(24115917-24116017)
chr2 (21-85)||(38933664-38933728)
chr2 (63-121)||(37762042-37762100)
chr2 (26-85)||(14229355-14229414)
chr2 (21-80)||(32545870-32545929)
chr2 (63-121)||(14892300-14892357)
chr2 (28-85)||(33018622-33018679)
chr2 (21-73)||(14470589-14470641)
chr2 (21-85)||(37961783-37961847)
chr2 (20-58)||(37632987-37633025)
chr2 (20-49)||(6217328-6217357)
chr2 (20-49)||(9172986-9173015)
chr2 (21-58)||(29508687-29508724)
chr2 (67-119)||(8534189-8534241)
chr2 (23-79)||(14892343-14892399)
chr2 (21-85)||(24115997-24116061)
[»] scaffold0586 (2 HSPs)
scaffold0586 (21-121)||(7088-7187)
scaffold0586 (27-85)||(7050-7108)
[»] chr6 (14 HSPs)
chr6 (21-121)||(17750900-17750999)
chr6 (21-121)||(24587458-24587558)
chr6 (23-121)||(551206-551304)
chr6 (51-121)||(12343127-12343197)
chr6 (63-121)||(10521890-10521948)
chr6 (63-121)||(24618642-24618700)
chr6 (69-121)||(13043502-13043554)
chr6 (23-85)||(13043534-13043596)
chr6 (20-85)||(24975748-24975813)
chr6 (51-104)||(31654332-31654385)
chr6 (30-85)||(12343177-12343232)
chr6 (21-85)||(7384485-7384549)
chr6 (21-85)||(17750979-17751043)
chr6 (21-80)||(24618598-24618657)
[»] scaffold0161 (2 HSPs)
scaffold0161 (20-121)||(27261-27362)
scaffold0161 (21-75)||(27217-27271)
[»] scaffold0047 (1 HSPs)
scaffold0047 (51-121)||(63784-63854)
[»] scaffold0016 (2 HSPs)
scaffold0016 (51-121)||(49744-49814)
scaffold0016 (21-85)||(49700-49764)
[»] scaffold0481 (1 HSPs)
scaffold0481 (75-121)||(2928-2974)
[»] scaffold1033 (1 HSPs)
scaffold1033 (76-121)||(2265-2310)
[»] scaffold1029 (1 HSPs)
scaffold1029 (76-121)||(2265-2310)
[»] scaffold0180 (1 HSPs)
scaffold0180 (77-121)||(19163-19207)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 19655154 - 19655255
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  19655154 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgt 19655253  T
Q  120 ga 121  Q
    ||    
T  19655254 ga 19655255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 291093 - 291194
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||| ||||||||||||||||||||||| |||||||| || |||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||||    
T  291093 tacttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgtgacattgt 291192  T
Q  120 ga 121  Q
    ||    
T  291193 ga 291194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 16439135 - 16439235
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    |||||| ||| |||||||||||| | ||| |||||||| |  |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  16439135 acttggatgatatagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 16439234  T
Q  121 a 121  Q
    |    
T  16439235 a 16439235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 29699381 - 29699464
Alignment:
Q  38 ttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||| |||||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  29699381 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 29699464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 12913800 - 12913900
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||| |||||||| ||||| |||||||| |||||||| || |||||||||||||||||  |||| | ||||||||||||||||||||| ||||||||||    
T  12913800 acttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcattatgacattgtg 12913899  T
Q  121 a 121  Q
    |    
T  12913900 a 12913900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 19598328 - 19598417
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcatt 109  Q
    |||||||||||||||||||||||| ||||| |||||||| |  |||||||||  ||||||| |||| |||||||||||||||||||||||    
T  19598328 tacttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatt 19598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 3899866 - 3899936
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  3899866 gtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 3899936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 16971171 - 16971241
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  16971171 gtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 16971241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 2953331 - 2953267
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||||    
T  2953331 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgt 2953267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 28818923 - 28819010
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    ||||||||||||||||||||||||||||| || |         ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  28818923 acttgggtgacatagagttgggtgacattggtca---------atcacaatgtcacaatacttgtatttctctctctttcacaagcattgtgacatt 28819010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 3180200 - 3180105
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    ||||| || |||||||||||| | ||||| |||||||| |  |||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||    
T  3180200 acttgtgtcacatagagttgg-taacattggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacatt 3180105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 16971285 - 16971221
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  16971285 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgt 16971221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 29699508 - 29699444
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||| ||||    
T  29699508 acttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatgcttgt 29699444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 39031295 - 39031200
Alignment:
Q  18 agtacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtga 113  Q
    |||| |||| ||||||||||| |||||||||| |||||| |    ||||||||| ||| ||| ||||||||||||| |||||||||||||||||||    
T  39031295 agtatttggatgacatagagtggggtgacattggtgacactgatcaatcacaatatcataatatttgtatttctctttctttcacaagcattgtga 39031200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 16802471 - 16802537
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    |||||||| || ||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||    
T  16802471 gtgacattggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagcattgtgacatt 16802537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 30117967 - 30117869
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||| |||||||||||||| ||||||| |||| ||| |  ||||| |||| ||||||| |||| ||||||||| ||||| || ||||||||||||||||    
T  30117967 ttggatgacatagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttcataaacattgtgacattgtga 30117869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 38134472 - 38134414
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||||||||| |||| ||||| |||||||||| ||||||||||||||||||    
T  38134472 aatcacaatgtcacaatgcttgtgtttctttctctttcactagcattgtgacattgtga 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 291238 - 291174
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||| |||||||||||||||||| ||||||||    |||||||||||||||||||||||    
T  291238 acttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgtttgt 291174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 2953239 - 2953287
Alignment:
Q  73 tcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2953239 tcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 2953287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 3899980 - 3899916
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||| ||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  3899980 acttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgt 3899916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 19655299 - 19655235
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||| |||||||| ||||||||  | |||||||||||||||||| ||||    
T  19655299 acttgggtgacatagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgcttgt 19655235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 1638454 - 1638518
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||| ||||| |||||||||||||| ||| |||| ||| || |||||||||||||||||||||||    
T  1638454 acttaggtgatatagagttgggtgatatttgtgatattggccaatcacaatgtcacaatgtttgt 1638518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 2094038 - 2093978
Alignment:
Q  61 ctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||| | ||| |||| |||| ||||||||||||||||||||||| |||||||||||    
T  2094038 ctaatcacactatcataatgcttgtgtttctctctctttcacaagcattatgacattgtga 2093978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 30117827 - 30117887
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgttt 83  Q
    |||||||| |||||||||||||||||| |||| |||  | |||||||||||||||||||||    
T  30117827 ttgggtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatgttt 30117887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 2935926 - 2935871
Alignment:
Q  66 cacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||||||||||| ||||||| ||||| |||| |||| |||||||||||    
T  2935926 cacaatgtcacaatgtttgtgtttctctatcttttacaaacattatgacattgtga 2935871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 26662438 - 26662496
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||| ||| || |||| ||||||||| ||||||||| |||||||||||||||    
T  26662438 aatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtga 26662496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 26934033 - 26934091
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||| ||| || |||| ||||||||| ||||||||| |||||||||||||||    
T  26934033 aatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtga 26934091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 2093934 - 2093998
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||| ||| ||||||||    ||||||||||||| |||| ||||    
T  2093934 acttgggtgacatagagttgggtgatattggtgacattgatcaatcacaatgtcataatgcttgt 2093998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 2356412 - 2356354
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatg 80  Q
    ||||| ||||||||||||||| ||||||| |||||||| || |||||| |||||||||||    
T  2356412 acttgtgtgacatagagttggatgacattggtgacattggccaatcac-atgtcacaatg 2356354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 39777050 - 39777085
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacatt 58  Q
    ||||||||||||||||||||||||||| ||||||||    
T  39777050 ttgggtgacatagagttgggtgacattggtgacatt 39777085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 12913938 - 12913880
Alignment:
Q  27 gtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||| |||| ||| |  ||||||||||||| |||| ||||    
T  12913938 gtgacatagagttgggtgacattggtgatattggtcaatcacaatgtcataatgcttgt 12913880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 28819056 - 28818994
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||| |||| ||| |||||||| |  ||||| |||||||||||| ||||    
T  28819056 ttgggtgacatagagttgagtgatattggtgacattggtcaatcataatgtcacaatgcttgt 28818994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 2953203 - 2953232
Alignment:
Q  20 tacttgggtgacatagagttgggtgacatt 49  Q
    ||||||||||||||||||||||||||||||    
T  2953203 tacttgggtgacatagagttgggtgacatt 2953232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 228399 - 228447
Alignment:
Q  73 tcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||| ||||| ||| ||||||||| ||||||||| |||||||||||    
T  228399 tcacaatatttgtgtttttctctcttttacaagcattttgacattgtga 228447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 19598463 - 19598435
Alignment:
Q  21 acttgggtgacatagagttgggtgacatt 49  Q
    |||||||||||||||||||||||||||||    
T  19598463 acttgggtgacatagagttgggtgacatt 19598435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 35441111 - 35441010
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  35441111 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgt 35441012  T
Q  120 ga 121  Q
    ||    
T  35441011 ga 35441010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 5033157 - 5033258
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| ||||||||  | |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  5033157 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgt 5033256  T
Q  120 ga 121  Q
    ||    
T  5033257 ga 5033258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 5667094 - 5667192
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    ||||||||||||||||||||| ||||||| |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  5667094 acttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcattatgacattgt 5667192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 10086753 - 10086854
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    ||||||||||||||||| |||||||||||| |||||||| |  ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||    
T  10086753 tacttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgt 10086852  T
Q  120 ga 121  Q
    ||    
T  10086853 ga 10086854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 8243530 - 8243429
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| ||||| || |  |||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||    
T  8243530 tacttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgt 8243431  T
Q  120 ga 121  Q
    ||    
T  8243430 ga 8243429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 33841733 - 33841632
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| ||||||||  | ||||| |||| ||||||| |||| ||||||||||||||||||||||||||||| |||    
T  33841733 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacaatgt 33841634  T
Q  120 ga 121  Q
    ||    
T  33841633 ga 33841632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 34229638 - 34229738
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||| ||||||||||||||||||||||| ||||||| ||  ||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||    
T  34229638 acttgtgtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtgatattgtg 34229737  T
Q  121 a 121  Q
    |    
T  34229738 a 34229738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 45191269 - 45191168
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||| ||| ||| ||||||||  | ||||| ||||| ||||||||||| ||||||||||||||| |||||||||| ||||||    
T  45191269 tacttgggtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagcattgtggcattgt 45191170  T
Q  120 ga 121  Q
    ||    
T  45191169 ga 45191168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 8796419 - 8796515
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    ||||||||||||||||||| ||||| ||| |||| ||| |  |||||||||||||||||| |||| ||||||| |||||||||||||||||||||||    
T  8796419 acttgggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtgacatt 8796515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 22649841 - 22649906
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||| ||||    
T  22649841 tacttgggtgacatagagttgagtgacattggtgacattggctaatcacaatgccacaatgcttgt 22649906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 5033302 - 5033238
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  5033302 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgt 5033238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 2581821 - 2581895
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctc 94  Q
    ||||||||||||||||| ||||||||||||  ||||||| || |||||||||| ||||||| |||| ||||||||    
T  2581821 tacttgggtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttctctc 2581895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 4958627 - 4958689
Alignment:
Q  52 tgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgac 114  Q
    ||||||| || ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||    
T  4958627 tgacattggccaatcacaatgtcataatgtttgtgtttctctctctttcacaagtattgtgac 4958689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 39850982 - 39851040
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcatt 109  Q
    |||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||    
T  39850982 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcatt 39851040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 10086891 - 10086834
Alignment:
Q  28 tgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||||| ||||||||  | |||||||||||||||||||||||    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgt 10086834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 33841588 - 33841652
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| ||||||||  | ||||||| |||||||||| ||||    
T  33841588 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgcttgt 33841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 35440966 - 35441030
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||| ||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  35440966 acttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgt 35441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 43844608 - 43844516
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    ||||||||||||||||||| ||||||| |||| |||    |||||||||||||||||| |||| ||||||||||  ||||||||||  |||||||    
T  43844608 ttgggtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgtttctctctc--tcacaagcatcctgacatt 43844516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 6296644 - 6296698
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    ||||||||||||| |||| |||| ||||||||||||||||||| |||||||||||    
T  6296644 aatcacaatgtcataatgcttgtgtttctctctctttcacaagtattgtgacatt 6296698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 5667239 - 5667174
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||| | ||||||| |||||||| || ||| ||||||||| |||| ||||    
T  5667239 tacttgggtgacatagagtttgatgacattggtgacattggccaattacaatgtcataatgcttgt 5667174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 31159900 - 31159944
Alignment:
Q  73 tcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||    
T  31159900 tcacaatatttttgtttctctctctttcacaagcattgtgacatt 31159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 34541896 - 34541852
Alignment:
Q  69 aatgtcacaatgtttgtatttctctctctttcacaagcattgtga 113  Q
    |||| ||||||| |||| |||||||||||||||||||||||||||    
T  34541896 aatgccacaatgcttgtgtttctctctctttcacaagcattgtga 34541852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 45191124 - 45191183
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatg 80  Q
    ||||||||||||||||||||| ||| ||| ||||||||   ||||||||||| |||||||    
T  45191124 acttgggtgacatagagttggatgatattggtgacattgattaatcacaatgccacaatg 45191183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 35031689 - 35031655
Alignment:
Q  87 tttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||||||||||||||| ||||||||||    
T  35031689 tttctctctctttcacaagcattgcgacattgtga 35031655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 6296749 - 6296688
Alignment:
Q  18 agtacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaat 79  Q
    |||| |||||||| |||||||||| ||||||| ||||||||||  ||| | |||||||||||    
T  6296749 agtatttgggtgatatagagttggatgacattagtgacattagtcaattataatgtcacaat 6296688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 29179739 - 29179638
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  29179739 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgt 29179640  T
Q  120 ga 121  Q
    ||    
T  29179639 ga 29179638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 37155042 - 37155143
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  37155042 tacttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtgacattgt 37155141  T
Q  120 ga 121  Q
    ||    
T  37155142 ga 37155143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 48994059 - 48993958
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| ||||||||  | |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  48994059 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgt 48993960  T
Q  120 ga 121  Q
    ||    
T  48993959 ga 48993958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 1091685 - 1091585
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||||||||||||||||||||||| ||| ||||| ||  | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1091685 acttgggtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtg 1091586  T
Q  121 a 121  Q
    |    
T  1091585 a 1091585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 36290551 - 36290456
Alignment:
Q  18 agtacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtga 113  Q
    |||||||||||||||||||||||||||||||| ||| ||||  | ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  36290551 agtacttgggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcattgtga 36290456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 17127705 - 17127605
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    |||||||||| |||||||| ||||||||| ||||||||  | ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  17127705 acttgggtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 17127606  T
Q  121 a 121  Q
    |    
T  17127605 a 17127605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 32540889 - 32540789
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    |||||||||||||||| |||| ||||||| ||||||||  | ||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||    
T  32540889 acttgggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 32540790  T
Q  121 a 121  Q
    |    
T  32540789 a 32540789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 44706923 - 44706829
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||| | ||||| |||| |||||||||||||||||||||||||| ||||    
T  44706923 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatt 44706829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 5995365 - 5995466
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||| | ||||||| || ||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||    
T  5995365 tacttgggtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgt 5995464  T
Q  120 ga 121  Q
    ||    
T  5995465 ga 5995466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 48498411 - 48498512
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| |||||||| |  ||||| |||  |||||||||||| |||||||||||||||||||||| || |||||||    
T  48498411 tacttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagcatggtaacattgt 48498510  T
Q  120 ga 121  Q
    ||    
T  48498511 ga 48498512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 4608993 - 4609093
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||| |||| || ||||||||||||||  ||||||||  |  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4608993 acttgtgtgatatggagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtg 4609092  T
Q  121 a 121  Q
    |    
T  4609093 a 4609093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 9157307 - 9157407
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||| ||||||||||||||||||||||| || |||||  | |||||||||||||||||| |||| |||||||||||||| |||||||||||| ||||||    
T  9157307 acttgtgtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtgatattgtg 9157406  T
Q  121 a 121  Q
    |    
T  9157407 a 9157407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 29371395 - 29371465
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29371395 gtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 29371465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 45728294 - 45728384
Alignment:
Q  31 catagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||||| ||| |||| |||  | ||||||||| |||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  45728294 catagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagcattatgacattgtga 45728384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 741600 - 741543
Alignment:
Q  64 atcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  741600 atcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 741543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 46931993 - 46932058
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||||||||    
T  46931993 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgt 46932058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 8337984 - 8337892
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    ||||||||||||||||||||||||||||||   |||       |||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  8337984 tacttgggtgacatagagttgggtgacatt---gacc------aatcacaatgccacaatgtttgtgtttctctctctttcacaaacattgtgacattgt 8337894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 21630039 - 21630118
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttc 100  Q
    ||||| |||||||| |||||||||||||| ||||||||  | |||||||||||||||||| |||| ||||||||||||||    
T  21630039 acttgcgtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 46334045 - 46333987
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  46334045 aatcacaatgtcacaatgcttgtgtttttctctctttcacaagcattgtgacattgtga 46333987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 47303434 - 47303492
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||    
T  47303434 aatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtga 47303492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 48993914 - 48993978
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  48993914 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgt 48993978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 34062236 - 34062306
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || |||||||||| ||||||| || | |||||||||||||||||| ||||||||||||||||    
T  34062236 gtgacattggccaatcacaatgccacaatgcttatgtttctctctctttcacaaacattgtgacattgtga 34062306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 28395636 - 28395708
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctct 95  Q
    |||||| ||||||||||| |||||||| ||||||||  | |||||||||||||||||| |||| |||||||||    
T  28395636 ttgggtaacatagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctct 28395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 15220850 - 15220908
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||| || |||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  15220850 aatcacgatctcacaatgcttgtgtttctctctctttcacaagcattgtgagattgtga 15220908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 15220950 - 15220888
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||| |||| ||| || ||||||||| |||||||| ||||    
T  15220950 ttgggtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatgcttgt 15220888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 33219612 - 33219670
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||| |||||| |||| ||| ||||||||||||||||||| |||||||||||    
T  33219612 aatcacaatgttacaatgcttgtgtttttctctctttcacaagcattatgacattgtga 33219670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 5995510 - 5995446
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||| ||||||| ||||||||  | |||||||||| ||||||| ||||    
T  5995510 acttgggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatgcttgt 5995446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 28928868 - 28928820
Alignment:
Q  73 tcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||||    
T  28928868 tcacagtgtttgtgtttctctctctttcacaagcactgtgacattgtga 28928820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 29179594 - 29179658
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||| |||||||||||||||||||||| |||||| |  | |||||||||||||||||| ||||    
T  29179594 acttggatgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgcttgt 29179658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 1819569 - 1819530
Alignment:
Q  82 ttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  1819569 ttgtgtttctctctctttcacaagcattgtgacattgtga 1819530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 38674602 - 38674546
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||| |||||||||||| |||| |||||||||  ||||||||||||||||||||||||    
T  38674602 aatcataatgtcacaatgcttgtgtttctctct--ttcacaagcattgtgacattgtga 38674546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 49445022 - 49444954
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || |||||||||| ||||||| |||| ||||||||||  ||||||||||||| |||||||||    
T  49445022 gtgacattggccaatcacaatgccacaatgcttgtgtttctctctc--tcacaagcattgtaacattgtga 49444954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 5694984 - 5694942
Alignment:
Q  67 acaatgtcacaatgtttgtatttctctctctttcacaagcatt 109  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  5694984 acaatgtcacaatatttgtgtttctctctctttcacaagcatt 5694942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 32540755 - 32540809
Alignment:
Q  31 catagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||| ||| |||| || |||||||||||||||||| ||||    
T  32540755 catagagttgggtgacattggtggcattggccaatcacaatgtcacaatgcttgt 32540809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 48605058 - 48604988
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || ||| | |||||||||||| |||  ||||||||||||||||||  |||||||||||||||    
T  48605058 gtgacattggccaattataatgtcacaatgcttgcgtttctctctctttcacaaatattgtgacattgtga 48604988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 46932122 - 46932062
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtt 82  Q
    ||||||||||||||||||| ||||||||| ||||||||  | |||||||||| |||||||||    
T  46932122 acttgggtgacatagagtt-ggtgacattggtgacattgaccaatcacaatgccacaatgtt 46932062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 17127561 - 17127625
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||| |||| |||||||| ||||||||| ||||||||  | |||||||||||||||||| ||||    
T  17127561 acttgtgtgatatagagttaggtgacattagtgacattgaccaatcacaatgtcacaatgcttgt 17127625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 49444910 - 49444946
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacat 57  Q
    ||||||||||||||||||||||||||||| |||||||    
T  49444910 acttgggtgacatagagttgggtgacattggtgacat 49444946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 31342260 - 31342315
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcac 76  Q
    |||||||||||||||||||||||||||    ||||||| || ||||||||||||||    
T  31342260 acttgggtgacatagagttgggtgacaccgatgacattggccaatcacaatgtcac 31342315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 12441096 - 12441042
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtca 75  Q
    |||||| ||||||||| || ||||||||| ||| |||| ||||||||||||||||    
T  12441096 acttggatgacatagaatttggtgacattggtggcattggctaatcacaatgtca 12441042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 19711319 - 19711221
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    |||| ||||| ||| |||| ||||||||| || ||||| ||| || |||||||||||||  || | |||||||||  |||||| ||||||| ||||||||    
T  19711319 acttaggtgatataaagtttggtgacattggtaacattggctgattacaatgtcacaattcttatgtttctctct--ttcacatgcattgtaacattgtg 19711222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 49445044 - 49445015
Alignment:
Q  20 tacttgggtgacatagagttgggtgacatt 49  Q
    ||||||||||||||||||||||||||||||    
T  49445044 tacttgggtgacatagagttgggtgacatt 49445015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 29371509 - 29371445
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||| ||||||||||| | ||||||||| |||| |||  | |||||||||||||||||| ||||    
T  29371509 acttgtgtgacatagagctaggtgacattggtgatattgaccaatcacaatgtcacaatgcttgt 29371445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 33219714 - 33219650
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||| |||||||||||| ||||||| ||||||||    ||||||||||||| |||| ||||    
T  33219714 acttgggtaacatagagttggatgacattggtgacattgatcaatcacaatgtcataatgcttgt 33219650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 48823891 - 48823919
Alignment:
Q  21 acttgggtgacatagagttgggtgacatt 49  Q
    |||||||||||||||||||||||||||||    
T  48823891 acttgggtgacatagagttgggtgacatt 48823919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 23444408 - 23444310
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  23444408 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 23444310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 6271698 - 6271799
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||| ||| |||||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  6271698 tacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgt 6271797  T
Q  120 ga 121  Q
    ||    
T  6271798 ga 6271799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 51265441 - 51265538
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  51265441 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacatt 51265538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 30861916 - 30861823
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtga 113  Q
    |||||||||||||||||||||| ||| ||| |||||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||||    
T  30861916 tacttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 30861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 35682163 - 35682263
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||||||||||||||||| ||||| ||| |||||||| || ||||||||||||| |||  |||| ||||||| ||||||||||||||||||||||||||    
T  35682163 acttgggtgacatagagttaggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtg 35682262  T
Q  121 a 121  Q
    |    
T  35682263 a 35682263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 47661856 - 47661939
Alignment:
Q  38 ttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||| |||||||| || |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  47661856 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 47661939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 40789206 - 40789276
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40789206 gtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 40789276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 26186155 - 26186057
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||||||||||||||||||||| |||||  ||||||| || ||||||||| |||||||| |||| ||  ||||||||||||||||||||||||||||||    
T  26186155 acttgggtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtgtt--tctctctttcacaagcattgtgacattgtg 26186058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 47762602 - 47762701
Alignment:
Q  18 agtacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    |||| ||||||||||||||| || |||| ||| ||||||||  | ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  47762602 agtatttgggtgacatagagctgagtgatatttgtgacattgaccaatcacaatgttacaatgtttatgtttctctctctttcacaagcattgtgacatt 47762701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 52028588 - 52028646
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52028588 aatcacgatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 52028646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 42375015 - 42375107
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| || |         ||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  42375015 tacttgggtgacatagagttgggtgacattggtca---------atcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgt 42375105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 55090095 - 55090037
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  55090095 aatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtga 55090037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 47404718 - 47404626
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| || |         ||||||||| ||||||| |||  |||||||||||||||||||||||||||||||||    
T  47404718 tacttgggtgacatagagttgggtgacattggtca---------atcacaatgccacaatgcttgggtttctctctctttcacaagcattgtgacattgt 47404628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 53954637 - 53954705
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||| || |||||||||||||||||| | || |||||| ||||||||||||||||||||||||||    
T  53954637 gtgacattggccaatcacaatgtcacaatgctagtgtttctcactctttcacaagcattgtgacattgt 53954705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 47661981 - 47661919
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  47661981 ttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgt 47661919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 3862687 - 3862623
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||| |||||||||||||||||||||||| |||||||| || |||||||||| ||||||| ||||    
T  3862687 acttaggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgt 3862623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 3871444 - 3871380
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||| |||||||||||||||||||||||| |||||||| || |||||||||| ||||||| ||||    
T  3871444 acttaggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgt 3871380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 6271843 - 6271779
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||| |||| ||| |||||||| || |||||||||||||||||| ||||    
T  6271843 acttgggtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgcttgt 6271779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 42375151 - 42375087
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| ||||||||    |||||||||||||||||| ||||    
T  42375151 acttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgt 42375087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 45591499 - 45591455
Alignment:
Q  73 tcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  45591499 tcacaatgtttgtgtttctctctctttcacaagcattgtgacatt 45591455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 50384194 - 50384146
Alignment:
Q  73 tcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  50384194 tcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 50384146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 30710041 - 30709986
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcac 76  Q
    ||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||    
T  30710041 acttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcac 30709986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 31532809 - 31532730
Alignment:
Q  42 gtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||  ||||||||  | |||||||| |||||||||||||||||||||||||||| |||   |||||||||||||||    
T  31532809 gtgacataggtgacattgaccaatcacaacgtcacaatgtttgtatttctctctcttttacatatattgtgacattgtga 31532730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 23444268 - 23444330
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||| |||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  23444268 ttgggtaacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgt 23444330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 24006159 - 24006111
Alignment:
Q  73 tcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  24006159 tcacaatgtttatgtttctctctctttcacaagcattgtgtcattgtga 24006111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 25818462 - 25818414
Alignment:
Q  73 tcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  25818462 tcacaatgattgtgtttctctctctttcacaatcattgtgacattgtga 25818414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 44379927 - 44380027
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    |||||| ||||||||||||| |||||||| | |||||| || ||| | |||||||||||| |||  ||||||||| ||| | ||| ||||| ||||||||    
T  44379927 acttggatgacatagagttgagtgacattggcgacattggccaattataatgtcacaatgcttgcgtttctctctattttataagtattgtaacattgtg 44380026  T
Q  121 a 121  Q
    |    
T  44380027 a 44380027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 51265586 - 51265522
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||| ||||    
T  51265586 acttgggtgacttagagttgggtgacattggtgacattgaccaatcataatgtcacaatgcttgt 51265522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 53954745 - 53954687
Alignment:
Q  27 gtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||| ||||||||  | ||| |||||||||||||| ||||    
T  53954745 gtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgt 53954687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 31430543 - 31430502
Alignment:
Q  80 gtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  31430543 gtttgtgtttctctctctttcataagcattgtgacattgtga 31430502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 38714965 - 38714900
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||| ||||||| || ||||||||||| |||| |||| | |||| ||||||||||||||||||    
T  38714965 tacttggatgacatatagatgggtgacattggtgatattacccaatctcaatgtcacaatgtttgt 38714900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 28694008 - 28693964
Alignment:
Q  77 aatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||    
T  28694008 aatgtttgtgtttctctctctttcacaaacattgtgatattgtga 28693964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 35682301 - 35682243
Alignment:
Q  27 gtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||| ||||||||| ||||||||  |  ||||||||||||||||| ||||    
T  35682301 gtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgcttgt 35682243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 5048941 - 5048884
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaa 78  Q
    |||||| ||||||||||||||||||||||  ||||||| |  ||||| ||||||||||    
T  5048941 acttggatgacatagagttgggtgacattgatgacattggtcaatcataatgtcacaa 5048884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 31430591 - 31430562
Alignment:
Q  20 tacttgggtgacatagagttgggtgacatt 49  Q
    ||||||||||||||||||||||||||||||    
T  31430591 tacttgggtgacatagagttgggtgacatt 31430562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 24006194 - 24006166
Alignment:
Q  21 acttgggtgacatagagttgggtgacatt 49  Q
    |||||||||||||||||||||||||||||    
T  24006194 acttgggtgacatagagttgggtgacatt 24006166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 31430467 - 31430495
Alignment:
Q  21 acttgggtgacatagagttgggtgacatt 49  Q
    |||||||||||||||||||||||||||||    
T  31430467 acttgggtgacatagagttgggtgacatt 31430495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 44380069 - 44380013
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaat 79  Q
    |||||||||||||||||| |||||||| |||| |||  | ||||||||||| |||||    
T  44380069 ttgggtgacatagagttgagtgacattggtgatattgaccaatcacaatgttacaat 44380013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 47404591 - 47404619
Alignment:
Q  21 acttgggtgacatagagttgggtgacatt 49  Q
    |||||||||||||||||||||||||||||    
T  47404591 acttgggtgacatagagttgggtgacatt 47404619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 50384111 - 50384139
Alignment:
Q  21 acttgggtgacatagagttgggtgacatt 49  Q
    |||||||||||||||||||||||||||||    
T  50384111 acttgggtgacatagagttgggtgacatt 50384139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 11016865 - 11016966
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||||    
T  11016865 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattgt 11016964  T
Q  120 ga 121  Q
    ||    
T  11016965 ga 11016966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 34854837 - 34854736
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| |||||||| |  |||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||    
T  34854837 tacttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtggcattgt 34854738  T
Q  120 ga 121  Q
    ||    
T  34854737 ga 34854736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 41018370 - 41018269
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| ||||||||  | |||||||||| ||||||| || | |||||||||||||||||||||||| ||||||||    
T  41018370 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgt 41018271  T
Q  120 ga 121  Q
    ||    
T  41018270 ga 41018269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 15027538 - 15027639
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    ||||||||| |||||||||||  ||||||| ||||||||  | |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||    
T  15027538 tacttgggtaacatagagttgtttgacattggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagcattgtgacattgt 15027637  T
Q  120 ga 121  Q
    ||    
T  15027638 ga 15027639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 38975801 - 38975898
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    |||||||||||||||||||||||||||||| || ||||| |  |||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||    
T  38975801 tacttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcatt 38975898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 27028929 - 27028834
Alignment:
Q  26 ggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||| ||||||||  || |||||||| |  ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  27028929 ggtgacatagacttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtgacattgtga 27028834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 4290541 - 4290642
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||| ||| |||| ||| |  |||||||||| ||||||| | || ||||||||||||||||||| |||||||||||||    
T  4290541 tacttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtgacattgt 4290640  T
Q  120 ga 121  Q
    ||    
T  4290641 ga 4290642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 45231992 - 45231908
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaa 104  Q
    |||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||| || | ||||||||||||||||||    
T  45231992 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttcacaa 45231908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 7672022 - 7671952
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  7672022 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtga 7671952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 11017010 - 11016946
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||||||    
T  11017010 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgt 11016946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 22764820 - 22764753
Alignment:
Q  42 gtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcatt 109  Q
    |||||||| |||| ||| || ||||||||||||||||||||||| |||||||||||||||||||||||    
T  22764820 gtgacattggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcatt 22764753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 29053425 - 29053355
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||    
T  29053425 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgaggcattgtga 29053355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 4290686 - 4290628
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaat 79  Q
    |||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||    
T  4290686 acttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaat 4290628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 30217588 - 30217504
Alignment:
Q  27 gtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtg 112  Q
    ||||||||||||| | |||||||  ||||||| || ||||||||| ||| ||||||| | ||||||||||||||||||||||||||    
T  30217588 gtgacatagagtttg-tgacattgatgacattcgccaatcacaatatcaaaatgtttatgtttctctctctttcacaagcattgtg 30217504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 41945859 - 41945952
Alignment:
Q  28 tgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||| ||| ||||||||  |||||||||  ||||| ||||||| ||||||||  ||| | ||||||||||||||||||| |||||||||    
T  41945859 tgacatagaattgagtgacattgatgacattagtcaatcataatgtcataatgtttgcgtttttttctctttcacaagcattgtaacattgtga 41945952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 42628436 - 42628372
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| |||| ||| || |||||||||||| ||||| ||||    
T  42628436 acttgggtgacatagagttgggtgacattggtgatattggccaatcacaatgtcccaatgcttgt 42628372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 42628334 - 42628392
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||| ||||||| || | |||||||||||||||||||||||| ||||||||||    
T  42628334 aatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtga 42628392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 48000776 - 48000834
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||| |||||||||||| |||||||||||||||||  ||||||| ||||||||    
T  48000776 aatcacaatgccacaatgtttgtgtttctctctctttcacagacattgtggcattgtga 48000834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 48000878 - 48000818
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgt 81  Q
    |||||||| |||||||||||||||||||| ||||||||  | |||||||||| ||||||||    
T  48000878 acttgggtcacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgt 48000818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 27028725 - 27028795
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttct 91  Q
    |||| ||||||||| ||||| |||||||| |||||||| |  |||||||||||||||||| |||| |||||    
T  27028725 actttggtgacatatagttgagtgacattggtgacattggacaatcacaatgtcacaatgcttgtgtttct 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 48000690 - 48000755
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||| ||||||||||||||| ||||||||    |||||||||| ||||||| ||||    
T  48000690 tacttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgccacaatgcttgt 48000755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 48000770 - 48000735
Alignment:
Q  86 atttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||||||||||||||||| ||||||||    
T  48000770 atttctctctctttcacaagcattgtggcattgtga 48000735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 10419497 - 10419555
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||| ||||| |||||  |||| |||||||||||||||||||  ||||||||||||||    
T  10419497 aatcataatgttacaatacttgtgtttctctctctttcacaagttttgtgacattgtga 10419555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 4649359 - 4649419
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctc--tctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||  |||||| |||| ||||||  |||||||||||||||| ||||||||||||    
T  4649359 aatcacaatgctacaatgcttgtgtttctctctctctttcacaagcatcgtgacattgtga 4649419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 29053447 - 29053418
Alignment:
Q  20 tacttgggtgacatagagttgggtgacatt 49  Q
    ||||||||||||||||||||||||||||||    
T  29053447 tacttgggtgacatagagttgggtgacatt 29053418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 45231860 - 45231888
Alignment:
Q  21 acttgggtgacatagagttgggtgacatt 49  Q
    |||||||||||||||||||||||||||||    
T  45231860 acttgggtgacatagagttgggtgacatt 45231888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 41752960 - 41753061
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||    
T  41752960 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtggcattgt 41753059  T
Q  120 ga 121  Q
    ||    
T  41753060 ga 41753061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 43139848 - 43139750
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||||||||||||||||| |||||||| || ||| |||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  43139848 ttgggtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcattctgacattgtga 43139750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 47492186 - 47492088
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||||||||||||||||| || | ||| || |||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||    
T  47492186 ttgggtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 47492088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 30734543 - 30734443
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||||||||||||||||| ||||||||| |||||||| || ||||||||||||| |||  |||| ||||||| ||||||||||||||||||||||||||    
T  30734543 acttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtg 30734444  T
Q  121 a 121  Q
    |    
T  30734443 a 30734443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 33689173 - 33689273
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||| |||||||||||||||||||||||  ||| ||| |  |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  33689173 acttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 33689272  T
Q  121 a 121  Q
    |    
T  33689273 a 33689273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 51046215 - 51046118
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    |||||||||||||||||||||| ||||||| |||||||| || |||||||||| || |||| |||| |||||||||||||||||| ||||||||||||    
T  51046215 tacttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtgacatt 51046118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 25560691 - 25560770
Alignment:
Q  141 accgacagagaaaccatgagaatagggagcgatattggtaagtaagttcttttgttacttaaaagagaatagttgatatt 220  Q
    ||||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||| || |||||||||||||||||||    
T  25560691 accgacatagaaaccatgagaataaggagctatattgataagtaagttcttttgttatttgaaagagaatagttgatatt 25560770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 47677354 - 47677296
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47677354 aatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 47677296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 18321648 - 18321748
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    |||||||  |||||||||||||||| ||| |||||||| |  |||||||||||||||| |||||| ||| ||||| ||||||| ||||||||||||||||    
T  18321648 acttgggcaacatagagttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcacatgcattgtgacattgtg 18321747  T
Q  121 a 121  Q
    |    
T  18321748 a 18321748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 1801557 - 1801487
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  1801557 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtga 1801487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 29031809 - 29031755
Alignment:
Q  67 acaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29031809 acaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 29031755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 30476573 - 30476515
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  30476573 aatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 30476515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 30580890 - 30580801
Alignment:
Q  28 tgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    ||||||||| |||||||||||| |||||||| |  ||||||||||||||| || |||| ||||| ||||||||||||  |||||||||||    
T  30580890 tgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaaatattgtgacatt 30580801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 50524706 - 50524799
Alignment:
Q  28 tgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||| |||| | |  |||||||  | ||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  50524706 tgacatagagttgagtgataatgatgacattgaccaatcataatgtcacaatgtttgtgtttctctctctttcacaagcatcgtaacattgtga 50524799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 1801443 - 1801507
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||| ||||    
T  1801443 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgt 1801507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 41753105 - 41753041
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||| |||||||| |||||||| || |||||||||| ||||||| ||||    
T  41753105 acttgggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatgcttgt 41753041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 55223229 - 55223325
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    ||||| ||||||||||||| ||||||||| |||| ||| |  ||||||||| | | |||  || | |||||||||||||||||||||||||||||||    
T  55223229 acttgtgtgacatagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtgacatt 55223325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 39385799 - 39385746
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaa 104  Q
    |||||||| || ||||||||||| ||||| ||||||||||||||||||||||||    
T  39385799 gtgacattggccaatcacaatgttacaatatttgtatttctctctctttcacaa 39385746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 50549971 - 50550068
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    |||||| |||| ||| || ||||||| ||| ||||||||  | ||||||||| | |||||| |||| |||||||||||||||||| |||| |||||||    
T  50549971 tacttgagtgatataaagctgggtgatattggtgacattgaccaatcacaatattacaatgcttgtgtttctctctctttcacaaacattatgacatt 50550068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 45103106 - 45103170
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| |||| |||    |||||||||||||||||| ||||    
T  45103106 acttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgcttgt 45103170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 50524843 - 50524791
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgt 73  Q
    |||||||||||||||||||| |||||||| |||| |||||  |||||||||||    
T  50524843 acttgggtgacatagagttgagtgacattggtgatattagtcaatcacaatgt 50524791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 47492061 - 47492108
Alignment:
Q  38 ttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||| |||||||| || |||||||||||||||||| ||||    
T  47492061 ttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgt 47492108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 45103180 - 45103150
Alignment:
Q  91 tctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||||||||||||||||||||||    
T  45103180 tctctctttcacaagcattgtgacattgtga 45103150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 1272590 - 1272557
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtga 54  Q
    ||||||||||||||||||||||||||||| ||||    
T  1272590 acttgggtgacatagagttgggtgacattggtga 1272557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 1801628 - 1801599
Alignment:
Q  20 tacttgggtgacatagagttgggtgacatt 49  Q
    ||||||||||||||||||||||||||||||    
T  1801628 tacttgggtgacatagagttgggtgacatt 1801599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 39057089 - 39057015
Alignment:
Q  30 acatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagc 106  Q
    |||||||||| ||||||||| |||||||  |  ||| |||||||||| |||||||| |||||||||  |||||||||    
T  39057089 acatagagttaggtgacattggtgacatcggacaatgacaatgtcacgatgtttgtgtttctctct--ttcacaagc 39057015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 30580753 - 30580817
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||| |||||||||| |||||||||||| |||| |||  | ||||| ||||||||||| |||||    
T  30580753 acttgagtgacatagaattgggtgacattggtgatattgaccaatcataatgtcacaatatttgt 30580817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 30734399 - 30734463
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||| ||||||||||||| |||||||||  |||||||  |  ||||||||||||||||| ||||    
T  30734399 acttgtgtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgcttgt 30734463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 49414555 - 49414527
Alignment:
Q  21 acttgggtgacatagagttgggtgacatt 49  Q
    |||||||||||||||||||||||||||||    
T  49414555 acttgggtgacatagagttgggtgacatt 49414527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 16514420 - 16514521
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||| ||| || |||| |||| |||||||||||||||||||||||||||||||||    
T  16514420 tacttgggtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtgacattgt 16514519  T
Q  120 ga 121  Q
    ||    
T  16514520 ga 16514521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 29508833 - 29508736
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    |||||||||||||||||||||||||| ||| |||||||| || |||||||||| | ||||| |||| |||||||||||||||||||||||||| ||||    
T  29508833 tacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatt 29508736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 15011294 - 15011377
Alignment:
Q  38 ttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||| |||| ||| || |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  15011294 ttgggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 15011377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 14470700 - 14470633
Alignment:
Q  54 acattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  14470700 acattagccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgcaacattgtga 14470633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 29925681 - 29925610
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtgag 122  Q
    |||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  29925681 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattctgacattgtgag 29925610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 2893990 - 2894060
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  2893990 gtgacattggccaatcacaatctcacaatgcttgtatttctctctctttcacaagcattgtgacactgtga 2894060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 6217335 - 6217265
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  6217335 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtga 6217265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 14229452 - 14229394
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  14229452 aatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 14229394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 6721965 - 6722048
Alignment:
Q  38 ttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||| ||||||| ||||||||  | ||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  6721965 ttggatgacattggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaaacattgtgacattgtga 6722048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 9173117 - 9173034
Alignment:
Q  26 ggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcatt 109  Q
    |||||||||||||||||||||||| |||| ||| || |||||||||| ||||||| |||||||||||| ||||| | |||||||    
T  9173117 ggtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttgtatttctctttcttttataagcatt 9173034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 2828611 - 2828681
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || ||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||    
T  2828611 gtgacattggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtgacattgtga 2828681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 6722092 - 6722028
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||| ||||||| |||| ||| || |||||||||||||||||||||||    
T  6722092 acttgggtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatgtttgt 6722028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 6217222 - 6217285
Alignment:
Q  22 cttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||| ||||    
T  6217222 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgt 6217285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 38933626 - 38933680
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacatt 117  Q
    |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  38933626 aatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacatt 38933680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 37961746 - 37961803
Alignment:
Q  64 atcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||    
T  37961746 atcacaatgccataatgtttgtgtttctctctctttcacaagcattgtggcattgtga 37961803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 16514565 - 16514501
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||| ||| ||||||||  | |||||||||||||||||| ||||    
T  16514565 acttgggtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgcttgt 16514501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 24115917 - 24116017
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||| |||| ||||||||| || ||||| || ||||| || ||||||||||| ||||||  ||| |||| | ||||||||||||||||| |||||||||    
T  24115917 acttgtgtgagatagagttgagtcacattggtaacattggccaatcacaatgttacaatgcctgtgtttcacactctttcacaagcattgcgacattgtg 24116016  T
Q  121 a 121  Q
    |    
T  24116017 a 24116017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 38933728 - 38933664
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||| ||||    
T  38933728 acttgggtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaatgcttgt 38933664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 37762100 - 37762042
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||| |||||||| |||| ||||| |||||||||||||||||| ||||||||||    
T  37762100 aatcacaatatcacaatgcttgtgtttctttctctttcacaagcattgcgacattgtga 37762042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 14229355 - 14229414
Alignment:
Q  26 ggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||| ||||||||| |||||||| |  |||||||||||||||||| ||||    
T  14229355 ggtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgcttgt 14229414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 32545929 - 32545870
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatg 80  Q
    |||||||||||||||||||  |||||||| |||||||| || ||||| ||||||||||||    
T  32545929 acttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatg 32545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 14892300 - 14892357
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||| ||||| |||||||||    
T  14892300 aatcacaatgtcaca-tgtttgtctttctctctctttcataagtattgtaacattgtga 14892357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 33018679 - 33018622
Alignment:
Q  28 tgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||||| |||| ||| |  |||||||||||||||||| ||||    
T  33018679 tgacatagagttgggtgacattggtgatattggtcaatcacaatgtcacaatgcttgt 33018622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 14470589 - 14470641
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgt 73  Q
    ||||| ||||||||||||||||||||||| ||||||||  | |||||||||||    
T  14470589 acttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgt 14470641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 37961847 - 37961783
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||| |||| ||| ||||||||  | |||||||||| ||||||| ||||    
T  37961847 acttgggtgacatagagttgagtgatatttgtgacattgaccaatcacaatgccacaatgcttgt 37961783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 37632987 - 37633025
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacatt 58  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  37632987 tacttgggtgacatagagtttggtgacattggtgacatt 37633025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 6217357 - 6217328
Alignment:
Q  20 tacttgggtgacatagagttgggtgacatt 49  Q
    ||||||||||||||||||||||||||||||    
T  6217357 tacttgggtgacatagagttgggtgacatt 6217328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 9172986 - 9173015
Alignment:
Q  20 tacttgggtgacatagagttgggtgacatt 49  Q
    ||||||||||||||||||||||||||||||    
T  9172986 tacttgggtgacatagagttgggtgacatt 9173015  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 29508687 - 29508724
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacatt 58  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  29508687 acttaggtgacatagagttgggtgacattggtgacatt 29508724  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 8534189 - 8534241
Alignment:
Q  67 acaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    ||||||| | ||| ||||| ||||||||| ||||||||| |||||||||||||    
T  8534189 acaatgtaaaaatatttgtgtttctctctatttcacaagaattgtgacattgt 8534241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 14892399 - 14892343
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaat 79  Q
    ||||||||||||||||||| ||||||| ||||||||    ||||||||||| |||||    
T  14892399 ttgggtgacatagagttggatgacattggtgacattgatcaatcacaatgttacaat 14892343  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 24116061 - 24115997
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||| |||||||||||||||||| |||| |||| ||| |  |||||||||||| ||||| ||||    
T  24116061 acttgtgtgacatagagttgggtgccattagtgatattggtcaatcacaatgtcgcaatgcttgt 24115997  T

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Target: scaffold0586 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 7187 - 7088
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||| ||||||||||||||| ||||||| |||||||| || |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  7187 acttgtgtgacatagagttgg-tgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 7089  T

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Target: scaffold0586; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 7050 - 7108
Alignment:
Q  27 gtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||||||| ||||    
T  7050 gtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatgcttgt 7108  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 17750900 - 17750999
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    ||||| ||||||||||||||  ||||||| |||||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17750900 acttgtgtgacatagagttga-tgacattggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtgacattgtg 17750998  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 24587458 - 24587558
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtg 120  Q
    |||| |||||||||||||||||||||||| |||||||| |  |||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||    
T  24587458 acttaggtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtgacattgtg 24587557  T
Q  121 a 121  Q
    |    
T  24587558 a 24587558  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 551304 - 551206
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||||| |||| ||| ||| |||||||| || |||||||||| ||||||| |||| |||||||||||||||||| ||||||| ||||||||    
T  551304 ttgggtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtggcattgtga 551206  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 12343127 - 12343197
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||  |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  12343127 gtgacattagtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 12343197  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 10521948 - 10521890
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||    
T  10521948 aatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtgacattgtga 10521890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 24618700 - 24618642
Alignment:
Q  63 aatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||    
T  24618700 aatcacaatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtga 24618642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 13043502 - 13043554
Alignment:
Q  69 aatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  13043502 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgatattgtga 13043554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 13043596 - 13043534
Alignment:
Q  23 ttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||| |||||||| ||||    
T  13043596 ttgggtgacatagagttgagtgatattggtgacattggctaatcacaatatcacaatgcttgt 13043534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 24975748 - 24975813
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||||| ||||||| |||||||| |  |||||||||| ||||||| ||||    
T  24975748 tacttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatgcttgt 24975813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 31654332 - 31654385
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaa 104  Q
    |||||||| || |||||||||||||||||| |||| ||||||||||||||||||    
T  31654332 gtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaa 31654385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 12343232 - 12343177
Alignment:
Q  30 acatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||| ||| |||||||| || |||||||||||||||||| ||||    
T  12343232 acatagagttgggtgagattggtgacattggccaatcacaatgtcacaatgcttgt 12343177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 7384485 - 7384549
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||| ||||| |||||||||| ||||||| ||||||||  | ||||||||||||| |||||||||    
T  7384485 acttaggtgatatagagttggatgacattagtgacattgaccaatcacaatgtcataatgtttgt 7384549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 17751043 - 17750979
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    ||||| ||||||||||||||||||| |||  ||||||| ||  ||||||||||||||||| ||||    
T  17751043 acttgtgtgacatagagttgggtgatattgatgacattggccgatcacaatgtcacaatgcttgt 17750979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 24618598 - 24618657
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatg 80  Q
    ||||| ||||||||||||||||||||||| ||||||||    ||||||||||||| ||||    
T  24618598 acttgagtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatg 24618657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 27362 - 27261
Alignment:
Q  20 tacttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgt 119  Q
    ||||||||||| |||||||||||||||||| |||| ||| || |||||||||| ||||||| || | ||||||||||||||||||| ||| |||||||||    
T  27362 tacttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaagaattatgacattgt 27263  T
Q  120 ga 121  Q
    ||    
T  27262 ga 27261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 27217 - 27271
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtca 75  Q
    ||||||||||||||||||||||||||||| |||| ||| || |||||||||||||    
T  27217 acttgggtgacatagagttgggtgacattagtgatattggccaatcacaatgtca 27271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 63784 - 63854
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  63784 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 63854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 49814 - 49744
Alignment:
Q  51 gtgacattagctaatcacaatgtcacaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    |||||||| || |||||||||| ||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  49814 gtgacattggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagcattgtgacattgtga 49744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 49700 - 49764
Alignment:
Q  21 acttgggtgacatagagttgggtgacattcgtgacattagctaatcacaatgtcacaatgtttgt 85  Q
    |||||||||||||||||||||||||||||  |||||||  | |||||||||||||||||| ||||    
T  49700 acttgggtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgt 49764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 2974 - 2928
Alignment:
Q  75 acaatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2974 acaatgtttgtgtttctctctctttcacaaacattgtgacattgtga 2928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 2265 - 2310
Alignment:
Q  76 caatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtga 2310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 2265 - 2310
Alignment:
Q  76 caatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtga 2310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 19207 - 19163
Alignment:
Q  77 aatgtttgtatttctctctctttcacaagcattgtgacattgtga 121  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||||    
T  19207 aatgtttgtgtttctctttcttccacaagcattgtgacattgtga 19163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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