View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_31 (Length: 231)
Name: NF19414_low_31
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 8168975 - 8168761
Alignment:
| Q |
1 |
agatgattagtgatctcttctagtttaactagaggtttgagttcaaatctagttatgataatgtagcaatgttaaatcttttgaaggagagttttgtcac |
100 |
Q |
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| T |
8168975 |
agatgattagtgatctcttctagtttaactagaggtttgagttcgaatctaattatgagaatgcagcaatgttaaatcttttgaaggagagttttgtcac |
8168876 |
T |
|
| Q |
101 |
ctataaaggtacttctatccgactcaaggaattagtctc-ttttctgagacaattttgccatccatagaggttatctggttcgtctttataattgcataa |
199 |
Q |
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| T |
8168875 |
ctatagaggttcttctatccaactcgaggaattagtctctttttctgagacaagtttgccatctatagaggttacct-gatcgtctttatagttgcatac |
8168777 |
T |
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| Q |
200 |
aaaggatacccaattt |
215 |
Q |
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| T |
8168776 |
aaaggatatccaattt |
8168761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 15064313 - 15064357
Alignment:
| Q |
51 |
agttatgataatgtagcaatgttaaatcttttgaaggagagtttt |
95 |
Q |
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| T |
15064313 |
agttatgaaaatgtatcaatgttaaatcttttgaagaagagtttt |
15064357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 6101740 - 6101699
Alignment:
| Q |
38 |
tgagttcaaatctagttatgataatgtagcaatgttaaatct |
79 |
Q |
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| T |
6101740 |
tgagttcaaatctagctatgagaatatagcaatgttaaatct |
6101699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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