View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_33 (Length: 201)
Name: NF19414_low_33
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 45318534 - 45318374
Alignment:
| Q |
23 |
gcctcaattttctcaggctctacctggttaacagtaattttctccaactccacctggttaactgtaggatttgctttcttctcatcattttcagcctcaa |
122 |
Q |
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| T |
45318534 |
gcctcaattttctcaggctctacctggttaacagtaattttctccgactccacctggttaactgtaggatttgctttcttctcatcattttcagcctcaa |
45318435 |
T |
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| Q |
123 |
ttttctcaggctccatctctgcctggttaacgataattttttcatactccacctggtttat |
183 |
Q |
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| T |
45318434 |
ttttctcaggctccgtctctgcctggttaacgataattttttcatactccacctggtttat |
45318374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 45318648 - 45318569
Alignment:
| Q |
23 |
gcctcaattttctcaggctctacctggttaacagtaattttctccaactccacctggttaactgtaggatttgctttctt |
102 |
Q |
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| T |
45318648 |
gcctcaattttctcaggctctatctggttaccagtaattttttcagactccaccaggttaactgtaggatttgctttctt |
45318569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 45318744 - 45318624
Alignment:
| Q |
23 |
gcctcaattttctcaggctctacctggttaacagtaattttctccaactccacctggttaactgtaggatttgctttcttctcatca---ttttcagcct |
119 |
Q |
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| T |
45318744 |
gcctcaattttctcagtctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcct |
45318645 |
T |
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| Q |
120 |
caattttctcaggctccatct |
140 |
Q |
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| T |
45318644 |
caattttctcaggctctatct |
45318624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 45318839 - 45318789
Alignment:
| Q |
87 |
taggatttgctttcttctcatcattttcagcctcaattttctcaggctcca |
137 |
Q |
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| T |
45318839 |
taggatttgctttcttatcatcatattcagcctcaattttctcaggctcca |
45318789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 45318418 - 45318321
Alignment:
| Q |
40 |
ctctacctggttaacagtaattttctccaactccacctggttaactgtaggatttgctttcttctcatcattttcagcctcaattttctcaggctcca |
137 |
Q |
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| T |
45318418 |
ctctgcctggttaacgataattttttcatactccacctggtttatagtaggattttttttcttatcatcatcttcagcctcaattttctcagactcca |
45318321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 45318793 - 45318686
Alignment:
| Q |
70 |
ctccacctggttaactgtaggatttgctttctt---ctcatcattttcagcctcaattttctcaggctccatctctgcctggttaacgataattttttca |
166 |
Q |
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| T |
45318793 |
ctccacctggttatcagtaggatttgttttcttatcatcatcatcttcagcctcaattttctcag------tctctacctggtgaacaataattttctca |
45318700 |
T |
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| Q |
167 |
tactccacctggtt |
180 |
Q |
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| T |
45318699 |
gactccacctggtt |
45318686 |
T |
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