View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19414_low_4 (Length: 475)
Name: NF19414_low_4
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 458
Target Start/End: Complemental strand, 12001590 - 12001143
Alignment:
| Q |
19 |
atcggaattaaagaataagtgatgattattcgactctttaccacaaccacatggagataacaaaacgttagaattcagtattcttcttc------atgcc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12001590 |
atcggaattaaagaataagtgatgattattcgactctttaccacaaccacatggaaataacaaaacgttagaattcagtattcttcttcttcttcatgcc |
12001491 |
T |
|
| Q |
113 |
aagtaatctttagtcagaatcttattgatctgaaacctccaaacaaatataaaaacttttagcaacatttgacaatgata----acgaatgcatcaatac |
208 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
12001490 |
aagtaatctttagtcggaatcttattgatttgaaacctccaaacaaata-acaaacttttagcaacacttgacaatgatagataacgaatgcaccaatat |
12001392 |
T |
|
| Q |
209 |
tggacaatacactcaaaatcatctctctttttcgcttatatatattttcttaatatgtgtaatatgaaaaataaactcagttattttacgataacgggag |
308 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
12001391 |
tggacaatgcattcaaaatcatctctctttttcacttatatatattttcttaatatgtgtaatatgaaaaataaactcagttattttactatgacgggag |
12001292 |
T |
|
| Q |
309 |
tataagttatctgatataccaaatttttaaaagttcaacttgatatcaattgannnnnnnaatttcttgtcaataaaggctaactcagttgataaggagt |
408 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
12001291 |
tataagttatttgatataccaaaattttaaaagttcaacttgatatcaattgatgtttttaatttcttgtcaataaa-gttaactcagttgataaggagt |
12001193 |
T |
|
| Q |
409 |
tgactcatactctataagtatgtgagttcaactctcaccgttagcgtaag |
458 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||| || |||||||| |
|
|
| T |
12001192 |
tgattcatactctacaagtatgtgagttcaactctcattgtcagcgtaag |
12001143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 4763246 - 4763180
Alignment:
| Q |
376 |
tgtcaataaaggctaactcagttgataaggagttgactcatactctataagtatgtgagttcaactc |
442 |
Q |
| |
|
||||||| |||| | |||||||| |||| ||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
4763246 |
tgtcaatgaaggttgactcagttaataaagagttgactgatactctataagggtgtgaattcaactc |
4763180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University