View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19414_low_5 (Length: 465)

Name: NF19414_low_5
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19414_low_5
NF19414_low_5
[»] chr1 (3 HSPs)
chr1 (187-449)||(42169301-42169572)
chr1 (13-189)||(42169655-42169831)
chr1 (107-164)||(48064182-48064241)
[»] chr7 (3 HSPs)
chr7 (376-449)||(21686047-21686120)
chr7 (303-352)||(7725551-7725600)
chr7 (107-136)||(5620261-5620290)
[»] scaffold0002 (1 HSPs)
scaffold0002 (317-423)||(333841-333947)
[»] chr4 (2 HSPs)
chr4 (107-161)||(17823012-17823068)
chr4 (108-136)||(30090132-30090160)
[»] chr5 (1 HSPs)
chr5 (107-135)||(14955597-14955625)
[»] chr3 (1 HSPs)
chr3 (108-136)||(37308232-37308260)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 187 - 449
Target Start/End: Complemental strand, 42169572 - 42169301
Alignment:
Q  187 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtagtattaattaccaacaaataa 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42169572 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtaatattaattaccaacaaataa 42169473  T
Q  287 t--------gtgtagccatggattatt-attacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaag 377  Q
    |        |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169472 tcagagttagtgtagccatggattatttattacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaag 42169373  T
Q  378 cttcttctaatgacatctttgacaactctgaagctaactgcttctcaagtaactcagccatgttcactatac 449  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42169372 cttcttctaatgacatctttgacaaatctgaagctaactgcttctcaagtaactcagccatgttcactatac 42169301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 42169831 - 42169655
Alignment:
Q  13 acatcatcacaagattttgaaatttgtgccatattccctcctttacgaaccctgtgaaaatgtaatttctgttagagattaccattaccctacgtaggcc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42169831 acatcatcacaagattttgaaatttgtgccatattccctcctttacgaaccctgtgaacatgtaatttctgttagagattaccattaccctacgtaggcc 42169732  T
Q  113 ctgtttggataaacaacttaattagcctcatagcataaggacttatcatgatattcacttatctataagttatttct 189  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42169731 ctgtttggataaacaacttaattagcctcatagcataaggactcatcatgatattcacttatctataagttatttct 42169655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 48064182 - 48064241
Alignment:
Q  107 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcatgat 164  Q
    |||||| |||||||||||||||||||||| ||  || ||||||||||  |||||||||||    
T  48064182 taggccatgtttggataaacaacttaatttgcagcttatagcataagcccttatcatgat 48064241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 376 - 449
Target Start/End: Original strand, 21686047 - 21686120
Alignment:
Q  376 agcttcttctaatgacatctttgacaactctgaagctaactgcttctcaagtaactcagccatgttcactatac 449  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21686047 agcttcttctaaagacatctttgacaactctgaagctaactgcttctcaattaactcagccatgttcactatac 21686120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 7725551 - 7725600
Alignment:
Q  303 attattacctatggtgagtttcagctatacccatcatagtaagataatgg 352  Q
    ||||||||||||||||||||||||||||| |  ||| |||||||||||||    
T  7725551 attattacctatggtgagtttcagctatatcagtcacagtaagataatgg 7725600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 5620290 - 5620261
Alignment:
Q  107 taggccctgtttggataaacaacttaatta 136  Q
    ||||||||||||||||||||||||||||||    
T  5620290 taggccctgtttggataaacaacttaatta 5620261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 423
Target Start/End: Complemental strand, 333947 - 333841
Alignment:
Q  317 tgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaagcttcttctaatgacatctttgacaactctgaagctaact 416  Q
    |||||||||||||| | ||||||||||||||| || ||||| ||||||||||| ||   ||||||||||||   |||||| || ||||||||||| ||||    
T  333947 tgagtttcagctatgctcatcatagtaagatagtgactgaatgcacgagcaagtgtttgagcttcttctaagttcatcttggataactctgaagccaact 333848  T
Q  417 gcttctc 423  Q
    |||||||    
T  333847 gcttctc 333841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 17823012 - 17823068
Alignment:
Q  107 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcat 161  Q
    |||||| |||||||||||||| ||||||| ||  |||||||||||||| ||||||||    
T  17823012 taggccttgtttggataaacagcttaatttgcagctcatagcataagggcttatcat 17823068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 30090132 - 30090160
Alignment:
Q  108 aggccctgtttggataaacaacttaatta 136  Q
    |||||||||||||||||||||||||||||    
T  30090132 aggccctgtttggataaacaacttaatta 30090160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 14955597 - 14955625
Alignment:
Q  107 taggccctgtttggataaacaacttaatt 135  Q
    |||||||||||||||||||||||||||||    
T  14955597 taggccctgtttggataaacaacttaatt 14955625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 37308260 - 37308232
Alignment:
Q  108 aggccctgtttggataaacaacttaatta 136  Q
    |||||||||||||||||||||||||||||    
T  37308260 aggccctgtttggataaacaacttaatta 37308232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University