View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_6 (Length: 423)
Name: NF19414_low_6
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 44093005 - 44093203
Alignment:
| Q |
15 |
tataagatggtcgtattggtttttggaaatcggtaagcccatc----cgtcaggaataatagctccacgtgcttttacaagaccatattaccatccaaca |
110 |
Q |
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| T |
44093005 |
tataagatggtcatattggtttttggaaatctgtaagcccatcgatccgtcaggaataatagctccacgtgcttttacaagaccatattaccatccaaca |
44093104 |
T |
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| Q |
111 |
ttttcaacttctggcctctcaagtccaccagtgaccatacacatcatagattgaaactgttgtctacccaatgaatgcaattgttttgtcatgcatact |
209 |
Q |
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| T |
44093105 |
ttttcaacttctggcctctcaagtccaccagtgaccatacacatcatagattgaaactgttgtctacccaacgaatgcaattgttttgtcatgcatact |
44093203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 39278565 - 39278738
Alignment:
| Q |
13 |
aatataagatggtcgtattggtttttggaaatcggtaagcccatccgtcaggaataatagctccacgtgcttttacaagaccatattaccatccaacatt |
112 |
Q |
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| T |
39278565 |
aatataagatggtggtattagtcttggtaaacctgtaagcccagccatcaggacgtatagctccgcggtgttttacaagatcatactcccatcccacatt |
39278664 |
T |
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| Q |
113 |
ttcaacttctggcctctcaagtccaccagtgaccatacacatcatagattgaaactgttgtctacccaatgaat |
186 |
Q |
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| T |
39278665 |
ttgaacttctggactctcttctccaccagtggccatacacatcagagattgaaattgttgacggcccaatgaat |
39278738 |
T |
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