View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19414_low_7 (Length: 416)

Name: NF19414_low_7
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19414_low_7
NF19414_low_7
[»] chr8 (12 HSPs)
chr8 (14-331)||(33953913-33954216)
chr8 (14-331)||(33976514-33976819)
chr8 (14-331)||(33961219-33961522)
chr8 (215-331)||(33993433-33993550)
chr8 (215-271)||(33983677-33983733)
chr8 (311-402)||(33983478-33983569)
chr8 (354-403)||(33953867-33953916)
chr8 (354-403)||(33961173-33961222)
chr8 (354-403)||(33976468-33976517)
chr8 (354-403)||(33993387-33993436)
chr8 (14-199)||(33983751-33983937)
chr8 (353-393)||(33914696-33914736)
[»] chr7 (2 HSPs)
chr7 (137-309)||(8275222-8275392)
chr7 (311-400)||(8275468-8275557)
[»] scaffold0391 (1 HSPs)
scaffold0391 (324-403)||(13431-13510)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 33954216 - 33953913
Alignment:
Q  14 agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||             ||||| ||    
T  33954216 agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcagaaaca--gg-------------gaaccaaa 33954132  T
Q  114 ggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnntt 213  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||       ||    
T  33954131 ggactacaaaaagctttttagagttggagaagcatagaaggatttactaccaccttattagaatgtaaataaatcaatagaatgagctgataaaaaaatt 33954032  T
Q  214 taaaattgaatttattgattgagaatagctaatacaaatcatgtatttatac-aaaagaaattacaaaatattacaaaagaattttaattatatactgta 312  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||    
T  33954031 aaaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaaagaaattacaaaatattacaaaagaattttaattatatgctata 33953932  T
Q  313 caaaagtcattcaaagaag 331  Q
    |||||||||||||||||||    
T  33953931 caaaagtcattcaaagaag 33953913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 33976819 - 33976514
Alignment:
Q  14 agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtat--gaacct 111  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||| |||  |   ||||||    
T  33976819 agaccatgcttggcaaattttgaggatcaactgcttctagccgactttgatctatgactgaagaactcagaaacaa-ggaacaaaaaaaaaaaggaacct 33976721  T
Q  112 aaggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnn 211  Q
    ||||||||||||||||||||||||  ||||||||||||          ||||||||||||| |||||||||||||||| |||||||||  | |           
T  33976720 aaggactacgaaaagctttttagaactggagaagcata----------ctaccaccttattatcatgtaaataaatcattagaatgagtagttaaaa--- 33976634  T
Q  212 tttaaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatactgt 311  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  33976633 ttaaaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatgctat 33976534  T
Q  312 acaaaagtcattcaaagaag 331  Q
    ||||||||||||||||||||    
T  33976533 acaaaagtcattcaaagaag 33976514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 33961522 - 33961219
Alignment:
Q  14 agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa 113  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||| |||  | ||||||||    
T  33961522 agaccatgcttggaaaattttgaggatcaactgcttctagccgactttgatctatgactgaagaactcagaaacaa-ggaacaaaaaaaaaggaacctaa 33961424  T
Q  114 ggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnntt 213  Q
    |||||||||||| |||||||||  ||||||||||||          |||||| |||||| || ||||||||||||| |||||||||  | |       ||    
T  33961423 ggactacgaaaaactttttagaactggagaagcata----------ctaccagcttattatcttgtaaataaatcattagaatgagtagttaaaa---tt 33961337  T
Q  214 taaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatactgtac 313  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  33961336 aaaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatgctatac 33961237  T
Q  314 aaaagtcattcaaagaag 331  Q
    ||||||||||||||||||    
T  33961236 aaaagtcattcaaagaag 33961219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 215 - 331
Target Start/End: Complemental strand, 33993550 - 33993433
Alignment:
Q  215 aaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaa-gaaattacaaaatattacaaaagaattttaattatatactgtac 313  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||    
T  33993550 aaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaaagaaattacaaaatattacaaaagaattttaattatatgctatac 33993451  T
Q  314 aaaagtcattcaaagaag 331  Q
    ||||||||||||||||||    
T  33993450 aaaagtcattcaaagaag 33993433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 33983733 - 33983677
Alignment:
Q  215 aaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaaga 271  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33983733 aaaattgaatttattgattgagaatagctaatacaaatcatgtagttatacaaaaga 33983677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 402
Target Start/End: Complemental strand, 33983569 - 33983478
Alignment:
Q  311 tacaaaagtcattcaaagaagaggtcttagcagatcatttattgaagccaatttaagttaacatcaacatgaggaacctctatcttcatatt 402  Q
    |||| ||||||||||||||||||||||||  |||||||||| | |||  | ||||||||| ||||||| |||||||||||||||||||||||    
T  33983569 tacagaagtcattcaaagaagaggtcttatgagatcatttactaaagttagtttaagttagcatcaacctgaggaacctctatcttcatatt 33983478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 33953916 - 33953867
Alignment:
Q  354 gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattg 403  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33953916 gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattg 33953867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 33961222 - 33961173
Alignment:
Q  354 gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattg 403  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33961222 gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattg 33961173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 33976517 - 33976468
Alignment:
Q  354 gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattg 403  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33976517 gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattg 33976468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 33993436 - 33993387
Alignment:
Q  354 gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattg 403  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33993436 gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattg 33993387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 33983937 - 33983751
Alignment:
Q  14 agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa 113  Q
    |||||||| ||||||| ||| ||||||| ||  ||| ||||| | |||||||||||||||||||||||  |||  | |||| |||||| ||  |||||||    
T  33983937 agaccatgtttgacaagtttggaggatcgacaactttttgccaaatttgatctatgattgaagaactc-aaaaatagggaaaaagaaaatagaaacctaa 33983839  T
Q  114 ggact-acgaaaagcttttt-agagttggagaagc--atagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgag 199  Q
    | ||| |  ||||||||||| |||||||||||| |  |||||||| |||||||   | ||||| ||||||||| ||||| ||||||||||    
T  33983838 gtactaaaaaaaagctttttaagagttggagaaccatatagaaggatttacta--gctttattatcatgtaaaaaaatctatagaatgag 33983751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 33914736 - 33914696
Alignment:
Q  353 tgaagccaatttaagttaacatcaacatgaggaacctctat 393  Q
    ||||||||||||||||| || ||||| ||||||||||||||    
T  33914736 tgaagccaatttaagttgacttcaacttgaggaacctctat 33914696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 309
Target Start/End: Original strand, 8275222 - 8275392
Alignment:
Q  137 ttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnntttaaaattgaatttattgattgag 236  Q
    |||||||||||||| ||| ||||||| ||||||||| ||||||||| ||||| ||||||||||  |||       || |||||| ||| |||||||| ||    
T  8275222 ttggagaagcataggaggatttactagcaccttattatcatgtaaacaaatctatagaatgagtagataaaaa--ttaaaaatttaatctattgattaag 8275319  T
Q  237 aatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatact 309  Q
    |||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  8275320 aatagctaatacaaatcatgcatttatacaaaagaatttacaaaagattacaaaagaattttagttatatact 8275392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 8275468 - 8275557
Alignment:
Q  311 tacaaaagtcattcaaagaagaggtcttagcagatcatttattgaagccaatttaagttaacatcaacatgaggaacctctatcttcata 400  Q
    |||||||  |||||||||||| |||| ||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  8275468 tacaaaatccattcaaagaagcggtcgtagcagatcctttaatgatggcaatttaagttaacatcaacatgaggaacctctatcttcata 8275557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 13510 - 13431
Alignment:
Q  324 caaagaagaggtcttagcagatcatttattgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattg 403  Q
    |||| |||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13510 caaataagaggtcttgggagatcatttactgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattg 13431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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