View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_8 (Length: 412)
Name: NF19414_low_8
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 207 - 386
Target Start/End: Original strand, 38611616 - 38611795
Alignment:
| Q |
207 |
ttccttccattcatgtttgttggctcgaaaccatgaagattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagta |
306 |
Q |
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| T |
38611616 |
ttcctttcactcatgtttgatggcttaaaaccgtgcagattaaaaaattaaaattgccaatgaagtttggaaatcatagaggctttgcttttgtggagta |
38611715 |
T |
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| Q |
307 |
tgttacccagcaggaggcacaaagtgctcttacagctctctcaagcacccaattgtatggcagacatcttgtaagtgaaa |
386 |
Q |
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| T |
38611716 |
tgttactcagcaggaggcacaaaatgctcttacagcactctcaagcacccacttgtatggcagacatctggtaagtgaaa |
38611795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 243 - 388
Target Start/End: Complemental strand, 37735436 - 37735291
Alignment:
| Q |
243 |
agattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagtatgttacccagcaggaggcacaaagtgctcttacagc |
342 |
Q |
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| T |
37735436 |
agattaaaagtttaagattaccaatgaagtttggaaatcatagaggatttgcttttgtggagtatgttactcagcaggaggcacaaaatgcacttacagc |
37735337 |
T |
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| Q |
343 |
tctctcaagcacccaattgtatggcagacatcttgtaagtgaaact |
388 |
Q |
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| T |
37735336 |
actctcaagtacccacttgtatggcagacatctggtaagtgaaact |
37735291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 234 - 388
Target Start/End: Complemental strand, 37750914 - 37750760
Alignment:
| Q |
234 |
aaaccatgaagattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagtatgttacccagcaggaggcacaaagtgc |
333 |
Q |
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| T |
37750914 |
aaaccgtgcagattaaaagtttaagattaccaatgaagtttggaaatcatagaggatttgcttttgtggagtatgttactcagcaggaggcacaaaatgc |
37750815 |
T |
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| Q |
334 |
tcttacagctctctcaagcacccaattgtatggcagacatcttgtaagtgaaact |
388 |
Q |
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| T |
37750814 |
acttacagcactctcaagtacccacttgtatggaagacatctggtaagtgaaact |
37750760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 38611394 - 38611514
Alignment:
| Q |
35 |
aaagtaaaaaagagagttgagaaagacaagagttcaactaagttgcttgtgaaaaatattccttttgaggcaacaaagaaggatctgagacaattgttta |
134 |
Q |
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| T |
38611394 |
aaagtacaaaagaaagttgagaaagacaagagttcaactaagttgcttgtgagaaatgttgcttttgaggcaacaaagaaggatctgagacagttattta |
38611493 |
T |
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| Q |
135 |
gcccgtttgggcaggtgatta |
155 |
Q |
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| T |
38611494 |
gcccatttggccaggtgatta |
38611514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 155
Target Start/End: Complemental strand, 37735670 - 37735550
Alignment:
| Q |
35 |
aaagtaaaaaagagagttgagaaagacaagagttcaactaagttgcttgtgaaaaatattccttttgaggcaacaaagaaggatctgagacaattgttta |
134 |
Q |
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|||||| |||||| |||||||||||| ||||||||||| ||||| |||||||||||| || | |||||||||||| ||||||| ||||||||||| |||| |
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| T |
37735670 |
aaagtacaaaagaaagttgagaaagataagagttcaaccaagttacttgtgaaaaatgttgcctttgaggcaacagagaaggacctgagacaattattta |
37735571 |
T |
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| Q |
135 |
gcccgtttgggcaggtgatta |
155 |
Q |
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| T |
37735570 |
gcccgtttggccaggtgatta |
37735550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 37751148 - 37751037
Alignment:
| Q |
42 |
aaaagagagttgagaaagacaagagttcaactaagttgcttgtgaaaaatattccttttgaggcaacaaagaaggatctgagacaattgtttagcccgtt |
141 |
Q |
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| T |
37751148 |
aaaagaaagttgagaaagataagagttcaactacgttgcatgtgaaaaatgttgtttttgaggcaataaagaaggatctgagacaattatttagcccgtt |
37751049 |
T |
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| Q |
142 |
tgggcaggtgat |
153 |
Q |
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| T |
37751048 |
tggccaggtgat |
37751037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 5808742 - 5808693
Alignment:
| Q |
354 |
cccaattgtatggcagacatcttgtaagtgaaactatgttgtgccctttg |
403 |
Q |
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| T |
5808742 |
cccaattgtatggcagacatcttgtaagtgaaactatgctgtgccctttg |
5808693 |
T |
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