View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_9 (Length: 393)
Name: NF19414_low_9
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 379
Target Start/End: Complemental strand, 47729339 - 47728974
Alignment:
| Q |
10 |
attattcttcatgcagctatgagttattcaactcttcctgtgagacatagctaccttcatctatgttaccattatactagcctatgccattattaccatc |
109 |
Q |
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| T |
47729339 |
attattcttcatgcagctatgagttattcaactcttcctgtgagacatagctaccttcatctatgttaccattatactagcctatgccattattaccatc |
47729240 |
T |
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| Q |
110 |
tctaattacttgtactcaattttttgtatttcttccacagacatggctaccttcacctctattaccaatctacatacaaaatatacatagagcaaaacat |
209 |
Q |
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| T |
47729239 |
tctaattacttgtactcaattttttgtatttcttccacagacatggctaccttcacctctattaccaatctacatacaaaatatacatagagcaaaacat |
47729140 |
T |
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| Q |
210 |
ggaagtgattcaggtagctacgacacagagggaaggtgagaaacatgtcaacttttcttattgatattttgtacgtactatcaagtactgttgctaaaac |
309 |
Q |
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| T |
47729139 |
ggaagtgattcgggtagctatgacacagagggaaggtgagaaacatgtcaacttttcttattgatatttt----gtactatcaagtactgttgctaaaac |
47729044 |
T |
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| Q |
310 |
aatattttttaggttcattccggcaaatttggaactaatgttcagtaagtatgctcgtgaagtgcctgat |
379 |
Q |
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| T |
47729043 |
aatattttttaggttcattccggcaaatttggaactaatgttcagtaagtatgctcgtgaagtgcctgat |
47728974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 32674325 - 32674267
Alignment:
| Q |
159 |
ccttcacctctattaccaatctacatacaaaatatacatagagcaaaacatggaagtga |
217 |
Q |
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| T |
32674325 |
ccttcacctctttttcctatatacatacacaacatacatagagcaaaacatgggagtga |
32674267 |
T |
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