View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19415_high_3 (Length: 356)

Name: NF19415_high_3
Description: NF19415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19415_high_3
NF19415_high_3
[»] chr6 (15 HSPs)
chr6 (15-356)||(23247229-23247570)
chr6 (15-356)||(23257614-23257958)
chr6 (15-356)||(23251641-23251982)
chr6 (15-356)||(23266175-23266513)
chr6 (215-345)||(23289602-23289729)
chr6 (257-356)||(23391075-23391174)
chr6 (215-356)||(23283251-23283389)
chr6 (15-128)||(23391300-23391413)
chr6 (232-315)||(23593009-23593092)
chr6 (28-174)||(23283472-23283618)
chr6 (16-172)||(23289787-23289943)
chr6 (257-336)||(23582869-23582948)
chr6 (257-336)||(23586752-23586831)
chr6 (276-311)||(23633835-23633870)
chr6 (15-77)||(23587038-23587100)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 23247570 - 23247229
Alignment:
Q  15 tgttgccgcaatagcattgaggggacgctacgcctgtctcaatttcgcagactcggtgtggcgccttcctataccagcaaccgccaagataaaagatatt 114  Q
    |||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||  ||   ||||||||||||    
T  23247570 tgttgctgcaatggcattgaggggccgctatgcctgtctcaatttctcagactcggtgtggcgccttcctattccagcaacttccgcaataaaagatatt 23247471  T
Q  115 caaaaggcagctgctgaagctgccgaaacatttaggccagacaatactttaatgactaacaatattgaaattgtcgaagatgtcgtcgccacaaaggacc 214  Q
    |||||||||||| |  |||| |||||| | ||||| |||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||| |    
T  23247470 caaaaggcagctacaaaagcggccgaagcttttagaccagacaatactttaatgactaacaatattgacactatcgtagatgtcgtcgccacaaaggagc 23247371  T
Q  215 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 314  Q
    |||||| ||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||    
T  23247370 tgaatatgttttgtgtggaagttgatgaacaggaggaaatgttgaatatgccagagttgtggaggaatatggcgttgatgtcacctacacatagctttga 23247271  T
Q  315 gtatcatgagtatgaagatattcatgtacaagattttcaaga 356  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  23247270 gtatcatgagtatgacgatattcatgtacaagattttcaaga 23247229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 23257958 - 23257614
Alignment:
Q  15 tgttgccgcaatagcattgaggggacgctacgcctgtctcaatttcgcagactcggtgtggcgccttcctataccagcaaccgccaagataaaagatatt 114  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||  ||  |||||||||||||    
T  23257958 tgttgccgcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatatt 23257859  T
Q  115 caaaaggcagctgctgaagctgccgaaacatttaggccagacaatactttaatgactaacaatattgaaattgtcgaagatgtcgtcgccacaaaggacc 214  Q
    |||||||| |||||||||||||||||| | ||||| |||||||| |||||||||| |||  ||||||| |  || | |  |||||| |||||||||||      
T  23257858 caaaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatgatattgacaccgtagtacctgtcgtggccacaaaggagt 23257759  T
Q  215 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 314  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  23257758 tgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacacatagctttga 23257659  T
Q  315 gtatcatg---agtatgaagatattcatgtacaagattttcaaga 356  Q
    ||||||||   ||||||||||||||||||||||||| ||||||||    
T  23257658 gtatcatgatcagtatgaagatattcatgtacaagactttcaaga 23257614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 23251982 - 23251641
Alignment:
Q  15 tgttgccgcaatagcattgaggggacgctacgcctgtctcaatttcgcagactcggtgtggcgccttcctataccagcaaccgccaagataaaagatatt 114  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||  ||  |||||||||||||    
T  23251982 tgttgccgcgatagcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatatt 23251883  T
Q  115 caaaaggcagctgctgaagctgccgaaacatttaggccagacaatactttaatgactaacaatattgaaattgtcgaagatgtcgtcgccacaaaggacc 214  Q
    |||||||||||| |  |||| |||||| | ||||| |||||||||||||||||||| |   | ||||| |  || | || ||| ||||| ||| |||| |    
T  23251882 caaaaggcagctacaaaagccgccgaagcttttagaccagacaatactttaatgaccagtgacattgacaccgttgtagctgttgtcgcaacacaggagc 23251783  T
Q  215 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 314  Q
    |||||| |||| |||| ||||| |||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23251782 tgaatatgtttcgtgttgaagtcgaagaag---aggaagtgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgg 23251686  T
Q  315 gtatcatg---agtatgaagatattcatgtacaagattttcaaga 356  Q
    ||||||||   ||||||||||||||||| ||||||| ||||||||    
T  23251685 gtatcatgatcagtatgaagatattcatatacaagactttcaaga 23251641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 23266513 - 23266175
Alignment:
Q  15 tgttgccgcaatagcattgaggggacgctacgcctgtctcaatttcgcagactcggtgtggcgccttcctataccagcaaccgccaagataaaagatatt 114  Q
    |||||| || || ||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||  ||   ||||||||||||    
T  23266513 tgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagattcggtgtggcggcttcctattccagcaacttcctcaataaaagatatt 23266414  T
Q  115 caaaaggcagctgctgaagctgccgaaacatttaggccagacaatactttaatgactaacaatattgaaattgtcgaagatgtcgtcgccacaaaggacc 214  Q
    |||||||||||| |  |||| |||||| | ||||| |||||||||||| |||||| || ||| ||||| | ||| | || ||| ||||||||||||||      
T  23266413 caaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattgagactgttgtagctgttgtcgccacaaaggagt 23266314  T
Q  215 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 314  Q
    |||||| |||||||||||||| ||||||      |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  23266313 tgaatatgttttgtgtggaagaagaaga------ggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagctttga 23266220  T
Q  315 gtatcatg---agtatgaagatattcatgtacaagattttcaaga 356  Q
    ||||||||   | ||||||||| ||||| | ||||| ||||||||    
T  23266219 gtatcatgatcaatatgaagattttcattttcaagactttcaaga 23266175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 215 - 345
Target Start/End: Complemental strand, 23289729 - 23289602
Alignment:
Q  215 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 314  Q
    |||||| ||||||||||||||| ||| ||||  ||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||||| |||||    
T  23289729 tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagttttga 23289630  T
Q  315 gtatcatgagtatgaagatattcatgtacaa 345  Q
    |   ||||||||||||||| || ||||||||    
T  23289629 g---catgagtatgaagattttgatgtacaa 23289602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 356
Target Start/End: Complemental strand, 23391174 - 23391075
Alignment:
Q  257 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 356  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| || |||| |||| |||||| |||||||||| ||||| ||||||||    
T  23391174 tgaacatgccagagttgttgaggaatatggcactaatgtctcctacacatagctctgggtataatgaatatgaaaatattcatgttcaagactttcaaga 23391075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 215 - 356
Target Start/End: Complemental strand, 23283389 - 23283251
Alignment:
Q  215 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 314  Q
    |||||| ||||||||||||||| ||| ||||  ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||  | ||    
T  23283389 tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaatgtcccctacacatagtatgga 23283290  T
Q  315 gtatcatgagtatgaagatattcatgtacaagattttcaaga 356  Q
    |   |||||||||||| || || || ||||||| ||||||||    
T  23283289 g---catgagtatgaaaattttgatttacaagactttcaaga 23283251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 23391413 - 23391300
Alignment:
Q  15 tgttgccgcaatagcattgaggggacgctacgcctgtctcaatttcgcagactcggtgtggcgccttcctataccagcaaccgccaagataaaagatatt 114  Q
    |||||||||||| ||||||||||| ||||||||||||||||| || |||||||| | |||||| || |||||||| || ||| |  ||  |||||||||     
T  23391413 tgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatata 23391314  T
Q  115 caaaaggcagctgc 128  Q
    |||||||| |||||    
T  23391313 caaaaggcggctgc 23391300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 23593092 - 23593009
Alignment:
Q  232 gaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgag 315  Q
    |||| |||| ||||| ||||| ||||||| || ||||||| || |||||||||||| ||||||||||||||||||||| |||||    
T  23593092 gaagaagaaaaagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagcgttgag 23593009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 23283618 - 23283472
Alignment:
Q  28 gcattgaggggacgctacgcctgtctcaatttcgcagactcggtgtggcgccttcctataccagcaaccgccaagataaaagatattcaaaaggcagctg 127  Q
    ||||| ||||| ||||| ||||||||||| || ||||||||||||||| | |||||||| || ||  ||||  |   |||||| ||||||| ||||||||    
T  23283618 gcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaagggcagctg 23283519  T
Q  128 ctgaagctgccgaaacatttaggccagacaatactttaatgactaac 174  Q
    | ||||| |||||  | || || |||||||| |||||||||||||||    
T  23283518 cagaagccgccgaggctttcagaccagacaagactttaatgactaac 23283472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 23289943 - 23289787
Alignment:
Q  16 gttgccgcaatagcattgaggggacgctacgcctgtctcaatttcgcagactcggtgtggcgccttcctataccagcaaccgccaagataaaagatattc 115  Q
    ||||| ||||| ||||||||||| ||||||||||||||||| || |||||||||| ||||   |||||||| || ||  ||||  |   |||||| ||||    
T  23289943 gttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaagcttcctattcctgcctccgctgaagcaaaagacattc 23289844  T
Q  116 aaaaggcagctgctgaagctgccgaaacatttaggccagacaatactttaatgacta 172  Q
    ||| ||||||||  ||||| || ||  | || || |||||||| |||||||||||||    
T  23289843 aaagggcagctggagaagccgctgaggctttcagaccagacaagactttaatgacta 23289787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 23582948 - 23582869
Alignment:
Q  257 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatatt 336  Q
    |||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| | |||| |||||||| || |||||    
T  23582948 tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatgagtatcaatatatt 23582869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 23586831 - 23586752
Alignment:
Q  257 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatatt 336  Q
    |||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| | |||| |||||||| || |||||    
T  23586831 tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatgagtatcaatatatt 23586752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 311
Target Start/End: Complemental strand, 23633870 - 23633835
Alignment:
Q  276 gaggaatatggcactaatgtcccctacacatagctt 311  Q
    |||||||||||| |||||||||||||||||||||||    
T  23633870 gaggaatatggctctaatgtcccctacacatagctt 23633835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 23587100 - 23587038
Alignment:
Q  15 tgttgccgcaatagcattgaggggacgctacgcctgtctcaatttcgcagactcggtgtggcg 77  Q
    |||||| ||||| ||||||||||| |||||||| |||||||| || |||||||| | ||||||    
T  23587100 tgttgctgcaatggcattgaggggccgctacgcttgtctcaactttgcagactcagcgtggcg 23587038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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