View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19415_high_4 (Length: 351)
Name: NF19415_high_4
Description: NF19415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19415_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 47759994 - 47760240
Alignment:
| Q |
1 |
ataatcagttgatagagaaaacaaagaggattctgaggacctttcttctttttcccctgtcttctcattataaagatcaaggttagattgattcatctgt |
100 |
Q |
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| T |
47759994 |
ataatcagttgatagagaaaacaaagaggattctgagtacctttcttctttttcccctgtcttctcattataaagatcaaggttagattgattcatcggt |
47760093 |
T |
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| Q |
101 |
cttgttttttcatccaaatctttggcttcatttggttgctcttcactctttgattcatcttttgcatgattactgttaacttcattttcttctattgaaa |
200 |
Q |
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| T |
47760094 |
cttgttttttcatccaaatctttggcttcatttggttgctcttcactctttgattcatcttttgcatgattactgttaacttcattttcttctattgaaa |
47760193 |
T |
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| Q |
201 |
ctggttttccacaagtaatggaaacagaaaaaagtgaatctgaacac |
247 |
Q |
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| T |
47760194 |
ctggttttccacaagtaatggaaacagaaaaaagtgaatctgaacac |
47760240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 47760258 - 47760322
Alignment:
| Q |
277 |
atggttatcaattatacaacattgaggtgttgttattttctcttccttcaatgttttttcctttg |
341 |
Q |
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| T |
47760258 |
atggttatcaattatacaacattgaggtgttgttattttctcttccttcaatgttttttcctttg |
47760322 |
T |
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