View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19415_high_6 (Length: 337)
Name: NF19415_high_6
Description: NF19415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19415_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 2 - 337
Target Start/End: Complemental strand, 44784278 - 44783943
Alignment:
| Q |
2 |
tgagcagcaccacagacctcccaaggctcnnnnnnngaaacacttattcagatcacttcaagcaacaaagtttttccagaccacagaacttgattgggtt |
101 |
Q |
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||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44784278 |
tgagctgcatcacagacctcccaaggctcaaaaaaagaaacacttattcagatcacttcaagcaacaaagtttttccagaccacagaacttgattgggtt |
44784179 |
T |
|
| Q |
102 |
gaagcaggtcttcaagtctgtcgacaggggtacaatatgttgaatctgctaattcacaggaaaaatttgaactatcttcaccttgattataatttcaatt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44784178 |
gaagcaggtcttcaagtctgtcgacaggggtacaatatgttgaatctgttaattcacaggaaaaatttgaactatcttcaccttgattataatttcaatt |
44784079 |
T |
|
| Q |
202 |
taaagcccgtcaaaaccttgactacaaaagagcgtaagaaatcacgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgt |
301 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44784078 |
taaagcctgtcaaaaccttgactacaaaagagcgtaagaaatcacgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgt |
44783979 |
T |
|
| Q |
302 |
ggtggatgccaatgttcagttccgtttgggtaacgt |
337 |
Q |
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| T |
44783978 |
ggtggatgccaatgttcagttccgtttgggtaacgt |
44783943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 334
Target Start/End: Original strand, 26157195 - 26157527
Alignment:
| Q |
2 |
tgagcagcaccacagacctcccaaggctcnnnnnnngaaacacttattcagatcacttcaagcaacaaagtttttccagaccacagaacttgattgggtt |
101 |
Q |
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||||| ||| ||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| || |
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| T |
26157195 |
tgagctgcatcacagacctcctaaggctcaaaaaaagaaacacttattcagatcacttgaagcaacaaagtttttccagacgacagaactttattgtttt |
26157294 |
T |
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| Q |
102 |
gaagcaggtcttcaagtctgtcgacaggggtacaatatgttgaatctgctaattcacaggaaaaatttgaactatcttcaccttgattataatttcaatt |
201 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26157295 |
gaagcaggtcttcaagtctgtcggcaggggtacaatatgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatt |
26157394 |
T |
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| Q |
202 |
taaagcccgtcaaaaccttgactacaaaagagcgtaagaaatcacgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgt |
301 |
Q |
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||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26157395 |
taaagcctgtcaaaaccttgactataaaagagcataagaaatcacgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgt |
26157494 |
T |
|
| Q |
302 |
ggtggatgccaatgttcagttccgtttgggtaa |
334 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
26157495 |
ggtggatgccaatgttcagttccgtttgggtaa |
26157527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 334
Target Start/End: Original strand, 26170493 - 26170825
Alignment:
| Q |
2 |
tgagcagcaccacagacctcccaaggctcnnnnnnngaaacacttattcagatcacttcaagcaacaaagtttttccagaccacagaacttgattgggtt |
101 |
Q |
| |
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||||| ||| ||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| || |
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| T |
26170493 |
tgagctgcatcacagacctcctaaggctcaaaaaaagaaacacttattcagatcacttgaagcaacaaagtttttccagacgacagaactttattgtttt |
26170592 |
T |
|
| Q |
102 |
gaagcaggtcttcaagtctgtcgacaggggtacaatatgttgaatctgctaattcacaggaaaaatttgaactatcttcaccttgattataatttcaatt |
201 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26170593 |
gaagcaggtcttcaagtctgtcggcaggggtacaatatgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatt |
26170692 |
T |
|
| Q |
202 |
taaagcccgtcaaaaccttgactacaaaagagcgtaagaaatcacgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgt |
301 |
Q |
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||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26170693 |
taaagcctgtcaaaaccttgactataaaagagcataagaaatcacgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgt |
26170792 |
T |
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| Q |
302 |
ggtggatgccaatgttcagttccgtttgggtaa |
334 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
26170793 |
ggtggatgccaatgttcagttccgtttgggtaa |
26170825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 43 - 334
Target Start/End: Original strand, 2896365 - 2896656
Alignment:
| Q |
43 |
acttattcagatcacttcaagcaacaaagtttttccagaccacagaacttgattgggttgaagcaggtcttcaagtctgtcgacaggggtacaatatgtt |
142 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |
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| T |
2896365 |
acttattcagatcacttcaagcgacaaagtttttccagaccacagaacttgattgggttgaagcaggtcttcaagtttgtaagcaggggtacaacatgtt |
2896464 |
T |
|
| Q |
143 |
gaatctgctaattcacaggaaaaatttgaactatcttcaccttgattataatttcaatttaaagcccgtcaaaaccttgactacaaaagagcgtaagaaa |
242 |
Q |
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||||||| | || |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
2896465 |
gaatctgttgatacacaggaaaaatttgaactaccttcaccttgattataattttaatttgaagcctgtcaaaaccttgactacaaaagagcgtaagaaa |
2896564 |
T |
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| Q |
243 |
tcacgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgtggtggatgccaatgttcagttccgtttgggtaa |
334 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |
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| T |
2896565 |
tcacgatttggtaatgcttttcatctctgtcgtgagatccttcgtttgacgaaacttgtggtggatgccaatgttcagtatcgcttgggtaa |
2896656 |
T |
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