View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19416_high_12 (Length: 287)
Name: NF19416_high_12
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19416_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 36064825 - 36064551
Alignment:
| Q |
1 |
tccaaacaaaatcactagactctctgtcccattctatctgcctatagatgtacagaaaagattacaaccaagcaaaatcaatcttcaatgaatgatttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36064825 |
tccaaacaaaatcactagactctctgtcccattctatctgcctatagatgtacagaaaagattacaaccaagcaaaatcaatcttcaatgaatgatttga |
36064726 |
T |
|
| Q |
101 |
agatcttgatccctctaaaaagcccttctaatgtatagttcaatatacaagaacaacaggagcaatctatttactcaacaagagaaacaacaccaactat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36064725 |
agatcttgatccctctaaaaagcccttctaatgtatagttcaatatacaagaacaacaggagcaatctatttactcaacaagagaaacaacaccaactat |
36064626 |
T |
|
| Q |
201 |
tcctccttgattttttgctcaaattaagcaaacaatgaaacagaaataccagcaagtttgttagcactcaacctt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36064625 |
tcctccttgattttttgctcaaattaagcaaacaatgaaacagaaataccagcaagtttgttagcactcaacctt |
36064551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University