View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19416_high_13 (Length: 283)
Name: NF19416_high_13
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19416_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 40086798 - 40086539
Alignment:
| Q |
12 |
atcatcacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatc |
111 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40086798 |
atcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacagtatc |
40086699 |
T |
|
| Q |
112 |
agctaattcctcttagagccaatttttcagtgaagtaatattatcatattaagttgaacttgtgaagaacatttcaggttgcaataccatatagtaattt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40086698 |
agctaattcctcttagagccaatttttcagtgaagtaatattatcatattattctgaacttgtgaagaacatttcaggttgcaataccatatagtaattt |
40086599 |
T |
|
| Q |
212 |
tgaaatgtaccgcctcgttggaaaaagcgtgcgacagcaaatgcgagatcttccacaggt |
271 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40086598 |
tgaaatgttccacctcgttggaaaaagcgtgcgacagcaaatgcgagatcttccacaggt |
40086539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 40079025 - 40078766
Alignment:
| Q |
12 |
atcatcacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatc |
111 |
Q |
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||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| | ||| |
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| T |
40079025 |
atcataacttgtagcaatgaaaggtccgccggtacttcggtcaaagttggttcctccatggtactgtttttgggcaagcaataaaaaatgataaagtatt |
40078926 |
T |
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| Q |
112 |
agctaattcctcttagagccaatttttcagtgaagtaatattatcatattaagttgaacttgtgaagaacatttcaggttgcaataccatatagtaattt |
211 |
Q |
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| T |
40078925 |
agctaattcctcttagagccaatttttccgtgaagtaatactatcatataaaattgaacttgcgaacaacatttcaggttgcaataccatatagtagttt |
40078826 |
T |
|
| Q |
212 |
tgaaatgtaccgcctcgttggaaaaagcgtgcgacagcaaatgcgagatcttccacaggt |
271 |
Q |
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|||||||| || || ||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
40078825 |
tgaaatgttccaccacgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
40078766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 40060893 - 40060644
Alignment:
| Q |
18 |
acttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaa |
117 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||| |||| |
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| T |
40060893 |
acttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaa |
40060794 |
T |
|
| Q |
118 |
ttcctcttagagccaatttttcagtgaagtaatattatcatattaagttgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaat |
217 |
Q |
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| T |
40060793 |
ttcctcttaaaaactggccttaag---aacaataccat-atagtaaattgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaat |
40060698 |
T |
|
| Q |
218 |
gtaccgcctcgttggaaaaagcgtgcgacagcaaatgcgagatcttccacaggt |
271 |
Q |
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|| || |||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
40060697 |
gttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
40060644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 52548941 - 52548999
Alignment:
| Q |
18 |
acttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtact |
76 |
Q |
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||||||||||||||| ||||| |||| | |||| |||||||| ||||||||||| |||| |
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| T |
52548941 |
acttgtagcaatgaagggtccaccagaagttcgatcaaagttagttcctccatgatact |
52548999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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