View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19416_high_17 (Length: 212)

Name: NF19416_high_17
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19416_high_17
NF19416_high_17
[»] chr1 (14 HSPs)
chr1 (14-198)||(44438586-44438770)
chr1 (19-122)||(4573367-4573470)
chr1 (14-116)||(30370096-30370198)
chr1 (14-119)||(30054478-30054583)
chr1 (14-122)||(21090103-21090211)
chr1 (14-118)||(20014450-20014554)
chr1 (32-122)||(33763308-33763398)
chr1 (13-122)||(45323994-45324103)
chr1 (14-98)||(12025193-12025277)
chr1 (14-84)||(22024129-22024199)
chr1 (33-118)||(30850895-30850980)
chr1 (32-81)||(14498133-14498182)
chr1 (64-122)||(15034443-15034501)
chr1 (32-85)||(33762594-33762647)
[»] chr2 (21 HSPs)
chr2 (20-122)||(25987704-25987806)
chr2 (19-122)||(40156028-40156131)
chr2 (14-117)||(45137006-45137109)
chr2 (14-122)||(2754087-2754195)
chr2 (14-122)||(6672829-6672937)
chr2 (14-121)||(21637886-21637993)
chr2 (32-122)||(5039408-5039498)
chr2 (32-122)||(36836383-36836473)
chr2 (19-84)||(558480-558545)
chr2 (14-118)||(3200873-3200977)
chr2 (14-122)||(44650381-44650489)
chr2 (19-122)||(2357117-2357219)
chr2 (19-122)||(17136375-17136478)
chr2 (19-122)||(36380173-36380276)
chr2 (33-122)||(10745287-10745376)
chr2 (14-107)||(26690157-26690250)
chr2 (16-107)||(33066593-33066684)
chr2 (32-122)||(7860200-7860290)
chr2 (52-122)||(13047227-13047295)
chr2 (19-98)||(30372721-30372800)
chr2 (32-77)||(21487181-21487226)
[»] chr7 (16 HSPs)
chr7 (14-122)||(35109679-35109787)
chr7 (14-122)||(21577134-21577242)
chr7 (14-122)||(38265273-38265381)
chr7 (16-122)||(11216757-11216863)
chr7 (19-116)||(12472115-12472212)
chr7 (33-122)||(38405209-38405298)
chr7 (14-122)||(41151160-41151269)
chr7 (39-122)||(16059414-16059497)
chr7 (32-122)||(34721822-34721912)
chr7 (32-118)||(48176391-48176477)
chr7 (14-122)||(18116980-18117088)
chr7 (14-92)||(37095246-37095324)
chr7 (39-121)||(45278441-45278523)
chr7 (53-97)||(245339-245383)
chr7 (33-107)||(23028686-23028760)
chr7 (32-78)||(28407540-28407586)
[»] chr3 (16 HSPs)
chr3 (14-122)||(7417786-7417894)
chr3 (14-122)||(8400843-8400951)
chr3 (19-122)||(50726038-50726141)
chr3 (19-122)||(50786707-50786810)
chr3 (14-119)||(50823689-50823794)
chr3 (14-119)||(50852066-50852171)
chr3 (14-122)||(35198753-35198861)
chr3 (14-122)||(48077977-48078085)
chr3 (42-122)||(52545309-52545389)
chr3 (32-119)||(55467990-55468077)
chr3 (14-116)||(43334090-43334192)
chr3 (39-122)||(22855875-22855958)
chr3 (39-104)||(29635874-29635939)
chr3 (19-96)||(42876229-42876306)
chr3 (33-81)||(22371784-22371832)
chr3 (33-118)||(34824548-34824633)
[»] chr4 (18 HSPs)
chr4 (19-122)||(30970425-30970528)
chr4 (19-122)||(36192529-36192632)
chr4 (19-122)||(46494439-46494542)
chr4 (14-122)||(51066481-51066589)
chr4 (13-122)||(51714000-51714109)
chr4 (19-122)||(8740436-8740539)
chr4 (19-122)||(50905736-50905839)
chr4 (14-122)||(32139152-32139260)
chr4 (16-122)||(39863816-39863922)
chr4 (13-100)||(22423386-22423473)
chr4 (52-122)||(2294784-2294854)
chr4 (15-77)||(4080589-4080651)
chr4 (14-122)||(7173621-7173729)
chr4 (14-82)||(55231715-55231783)
chr4 (19-86)||(41523421-41523488)
chr4 (14-92)||(47627029-47627107)
chr4 (32-101)||(50399696-50399765)
chr4 (14-81)||(29576444-29576511)
[»] chr8 (17 HSPs)
chr8 (32-122)||(19723299-19723389)
chr8 (14-121)||(4840129-4840236)
chr8 (19-122)||(22711497-22711600)
chr8 (34-122)||(27881044-27881132)
chr8 (34-122)||(28021225-28021313)
chr8 (32-122)||(24475050-24475140)
chr8 (14-122)||(11403989-11404097)
chr8 (14-122)||(32296675-32296783)
chr8 (19-122)||(28739602-28739705)
chr8 (14-92)||(17095568-17095646)
chr8 (32-123)||(30682826-30682917)
chr8 (14-122)||(29767176-29767282)
chr8 (33-81)||(21355039-21355087)
chr8 (14-121)||(41553274-41553381)
chr8 (14-77)||(43288105-43288168)
chr8 (32-77)||(36261679-36261724)
chr8 (39-122)||(11610268-11610351)
[»] chr5 (4 HSPs)
chr5 (32-122)||(20983057-20983147)
chr5 (14-122)||(17064311-17064419)
chr5 (60-122)||(37976534-37976596)
chr5 (58-119)||(35237103-35237164)
[»] chr6 (9 HSPs)
chr6 (14-122)||(35163786-35163894)
chr6 (56-121)||(14496341-14496406)
chr6 (14-122)||(2711770-2711878)
chr6 (32-122)||(19686881-19686971)
chr6 (14-89)||(20685346-20685421)
chr6 (14-84)||(24336641-24336711)
chr6 (55-95)||(14505600-14505640)
chr6 (41-83)||(15070152-15070194)
chr6 (19-84)||(17948706-17948771)
[»] scaffold0021 (1 HSPs)
scaffold0021 (32-122)||(107745-107835)
[»] scaffold0691 (1 HSPs)
scaffold0691 (19-107)||(7010-7098)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 44438586 - 44438770
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| |||||||||| || | ||| | |||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||| |||||||||  |||    
T  44438586 gcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggagctcgaacccaaattctcttaaatt 44438685  T
Q  114 caagacctgcttattttttactttggttgaatgcaatagttatatatattttttatttgtgtgacgaaattgaatgcaatagttg 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44438686 caagacctgcttattttttactttggttgaatgcaatagttatatatattttttatttgtgtgacgaaattgaatgcaatagttg 44438770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 4573470 - 4573367
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    |||||||||| | |||||| |||||||||| | ||| |||||||||||||||||||||| || ||||||||||||||||||  |||||| ||||||||||    
T  4573470 gaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaagacattagtggggctcgaacccgggttctctcggattcaaga 4573371  T
Q  119 cctg 122  Q
    ||||    
T  4573370 cctg 4573367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 30370096 - 30370198
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||    
T  30370096 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagacactagtggggctcgaacccggattctctcgaatt 30370195  T
Q  114 caa 116  Q
    |||    
T  30370196 caa 30370198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 30054478 - 30054583
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||    
T  30054478 gcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 30054577  T
Q  114 caagac 119  Q
    ||||||    
T  30054578 caagac 30054583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 21090211 - 21090103
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||| ||||| | ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| | |||    
T  21090211 gcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggcactagcggggctcgaacccgaattctctcgaatt 21090112  T
Q  114 caagacctg 122  Q
    |||||||||    
T  21090111 caagacctg 21090103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 20014554 - 20014450
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| |||||||||||  |||||| |||| ||||| | ||||||||||||||||||||||||||| ||||| ||| ||||||||||  |||||| |||||    
T  20014554 gcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccctccaaaggtactagcgggactcgaacccgggttctctcggatt 20014455  T
Q  114 caaga 118  Q
    |||||    
T  20014454 caaga 20014450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 33763308 - 33763398
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||||| |||||||| | |||||||||||| |||||||| ||||||||||| ||||||||||||   ||||||| | ||||||||||||    
T  33763308 ctcaaaaaacacttacaaaggtaattacatttgcctccctctaaaggcactagcggggctcgaacctagattctctcgaattcaagacctg 33763398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 45324103 - 45323994
Alignment:
Q  13 agcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggat 112  Q
    ||||| ||||||||||   |||||  |||||||||| | ||| ||||||||||||||||||||| ||||||| |||||| ||||||   |||||| ||||    
T  45324103 agcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctccctccaaaagcactagcggggctggaacccaggttctctcggat 45324004  T
Q  113 tcaagacctg 122  Q
    ||||||||||    
T  45324003 tcaagacctg 45323994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 12025277 - 12025193
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaaccc 98  Q
    |||| ||||||||||   |||||| || ||||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  12025277 gcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttcctccaaaggcactaatggggctcgaaccc 12025193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 22024199 - 22024129
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactag 84  Q
    |||||||||||||||   |||||| |||||||||| | |||||||||||||||||| ||||||||||||||    
T  22024199 gcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccatccaaaggcactag 22024129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 30850895 - 30850980
Alignment:
Q  33 tcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||| |||||||||| | | ||||| |||||||||||||||||| |||||  ||||||||||||||| |||||| ||||| ||||    
T  30850895 tcaaagagcacttacaaaggcaattatatttacctccctccaaagacactaacggggctcgaacccgagttctctcggatttaaga 30850980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 14498133 - 14498182
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcac 81  Q
    |||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  14498133 ctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 15034501 - 15034443
Alignment:
Q  64 acctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||||||||||||||||||| ||||||||||| |  |||| | ||||||||||||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcggattcaagacctg 15034443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 33762594 - 33762647
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagt 85  Q
    |||||||| |||||||| | |||||||||||| |||||||| ||||||||||||    
T  33762594 ctcaaaaaacacttacaaaggtaattacatttgcctccctctaaaggcactagt 33762647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 25987704 - 25987806
Alignment:
Q  20 aagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagac 119  Q
    |||||||||  ||||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||    
T  25987704 aagaccttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgagttctctcggattcaagac 25987803  T
Q  120 ctg 122  Q
    |||    
T  25987804 ctg 25987806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 40156131 - 40156028
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||||||||   |||||| |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  40156131 gaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccggattctctcggattcaaga 40156032  T
Q  119 cctg 122  Q
    ||||    
T  40156031 cctg 40156028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 45137006 - 45137109
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||    
T  45137006 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 45137105  T
Q  114 caag 117  Q
    ||||    
T  45137106 caag 45137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 2754087 - 2754195
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| |||||||||| | |||||| |||||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||| |||  |||||| |||||    
T  2754087 gcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagtgggactcgaatccgggttctctcggatt 2754186  T
Q  114 caagacctg 122  Q
    |||||||||    
T  2754187 caagacctg 2754195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 6672829 - 6672937
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| ||| | |||| | ||||||||||||||||||||||||||||||||| |||||| |||||||  |||||| |||||    
T  6672829 gcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcggggcttgaacccgggttctctcggatt 6672928  T
Q  114 caagacctg 122  Q
    |||||||||    
T  6672929 caagacctg 6672937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 21637993 - 21637886
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    ||||||||||||||    |||||| |||||||||| | ||| ||||||||||||||||||||||||||||| ||||||| ||||||  |||||| | |||    
T  21637993 gcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcaaacccgggttctctcgaatt 21637894  T
Q  114 caagacct 121  Q
    ||||||||    
T  21637893 caagacct 21637886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 5039498 - 5039408
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||| |||||||||| | |||||||| |||||||||||| ||| ||||||| || |||||||||||| |||||| ||||||||||||||    
T  5039498 ctcaaagagcacttacaaaggtaattacgtttacctccctctaaaagcactagcggagctcgaacccgagttctctcggattcaagacctg 5039408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 36836383 - 36836473
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||| |||||||||| | |||||||||||||||||||||||||||||| || ||| ||||||| ||  |||||| ||||||||||||||    
T  36836383 ctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcaccagcgggactcgaactcgggttctctcggattcaagacctg 36836473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 558480 - 558545
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactag 84  Q
    |||||||||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  558480 gaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccctccaaaggcactag 558545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 3200977 - 3200873
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||||||||| |||||  |||||| | |||||||| | ||||||||||||||||||||||||||||||||| | |||||||| ||   ||||||| ||||    
T  3200977 gcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaaggcactagcgaggctcgaatccaggttctcttagatt 3200878  T
Q  114 caaga 118  Q
    |||||    
T  3200877 caaga 3200873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 44650489 - 44650381
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||| ||||  ||||||| |||||||||| | ||||||||||||||||||||||||||||||||  || |||||||  ||  |||||| |||||    
T  44650489 gcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactaacggagctcgaaatcgggttctctcggatt 44650390  T
Q  114 caagacctg 122  Q
    |||||||||    
T  44650389 caagacctg 44650381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 2357117 - 2357219
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    |||||||||| ||||||||| ||| |||||   ||| ||||||||||||||||||||||| ||||||||  ||||||||||  |||||| ||||||||||    
T  2357117 gaagaccttcgaactcaaaa-gcatttacaatggtatttacatttacctccctccaaaggtactagtggaactcgaacccgggttctctcggattcaaga 2357215  T
Q  119 cctg 122  Q
    ||||    
T  2357216 cctg 2357219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 17136478 - 17136375
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||||||||   |||||| |||||||||| | ||| ||||||||||||||||||||||||||||  ||||||||||||||  ||||||  ||||||| |    
T  17136478 gaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactaacggggctcgaacccgggttctctcagattcaaaa 17136379  T
Q  119 cctg 122  Q
    ||||    
T  17136378 cctg 17136375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 36380173 - 36380276
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||||||||   |||||| |||||||||| | | ||||||||||||||||||||||||||||||| |||| || ||||||| || ||| | ||||||||    
T  36380173 gaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccctccaaaggcactagcggggttcaaacccgagttttctcgaattcaaga 36380272  T
Q  119 cctg 122  Q
    ||||    
T  36380273 cctg 36380276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 10745287 - 10745376
Alignment:
Q  33 tcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    ||||| |||||||||| |  |||||||||||||||||||| ||||||||||| |||||||| |||||  |||||| | ||||||||||||    
T  10745287 tcaaagagcacttacaaagataattacatttacctccctctaaaggcactagcggggctcggacccgggttctctcgaattcaagacctg 10745376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 26690250 - 26690157
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctct 107  Q
    |||| |||||||||| ||| |||| | |||||||| | ||||||||||||||||||||||||| ||||||| ||| |||||||||  |||||||    
T  26690250 gcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccctccaaaagcactagcgggactcgaacccagattctct 26690157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 33066684 - 33066593
Alignment:
Q  16 agagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctct 107  Q
    ||||||||||||||  |||||| |||||||||| |  || ||||||||||||| |||||||| ||||||||  ||||||||||| |||||||    
T  33066684 agagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaagacactagtgaagctcgaacccggattctct 33066593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 7860200 - 7860290
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||| | |||||||| | |||  |||||||||||||||||||||||||||| ||||||| |||||   |||||| ||||||||||||||    
T  7860200 ctcaaagaacacttacaaatgtatgtacatttacctccctccaaaggcactagcggggctcaaacccaggttctctcggattcaagacctg 7860290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 13047227 - 13047295
Alignment:
Q  52 gtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    ||||||| |||||||||||||||||| ||   | |||||||||||||| ||||||| | ||||||||||||    
T  13047227 gtaattatatttacctccctccaaagacat--gcggggctcgaacccggattctctcgaattcaagacctg 13047295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 30372721 - 30372800
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaaccc 98  Q
    ||||||||||   |||||| |||||| ||| |  || |||||||||||||| |||||||||||||| || ||||||||||    
T  30372721 gaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggcactagcggagctcgaaccc 30372800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 21487226 - 21487181
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaag 77  Q
    |||||| |||||||||| || || ||||||||||||||||||||||    
T  21487226 ctcaaagagcacttacaaaaatatttacatttacctccctccaaag 21487181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 35109787 - 35109679
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  35109787 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggatt 35109688  T
Q  114 caagacctg 122  Q
    |||||||||    
T  35109687 caagacctg 35109679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 21577134 - 21577242
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||  ||||||| |||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||    
T  21577134 gcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagtggggctcgaacccgggttctctcggatt 21577233  T
Q  114 caagacctg 122  Q
    |||||||||    
T  21577234 caagacctg 21577242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 38265273 - 38265381
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||   |||||| |||||    
T  38265273 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccaggttctctcggatt 38265372  T
Q  114 caagacctg 122  Q
    |||||||||    
T  38265373 caagacctg 38265381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 11216863 - 11216757
Alignment:
Q  16 agagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattca 115  Q
    |||||||||||||   |||||| |||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||||||  ||||||  ||||||    
T  11216863 agagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactaatggggctcgaacccgggttctctcagattca 11216764  T
Q  116 agacctg 122  Q
    |||||||    
T  11216763 agacctg 11216757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 12472212 - 12472115
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaa 116  Q
    ||||||||||   |||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  12472212 gaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaa 12472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 38405209 - 38405298
Alignment:
Q  33 tcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    ||||| |||||||||| |  |||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||    
T  38405209 tcaaagagcacttacaaagataattacatttacctccctccaaaggcactagcgaggctcgaactcgaattctctcggattcaagacctg 38405298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 41151269 - 41151160
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaag-taattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggat 112  Q
    |||| ||||||||||   |||||| |||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||  |||||| ||||    
T  41151269 gcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctccctccaaagacactagcggggctcgaacccgggttctctcggat 41151170  T
Q  113 tcaagacctg 122  Q
    ||||||||||    
T  41151169 tcaagacctg 41151160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 16059414 - 16059497
Alignment:
Q  39 agcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||  |||||| ||||||||||||||    
T  16059414 agcacttacaaaggtaattacatttacctccctgcaaaggcactagcggggctcgaacccgggttctctcggattcaagacctg 16059497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 34721912 - 34721822
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||| |||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||| |||  |||||| ||||||||||||||    
T  34721912 ctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggcttgaatccgggttctctcggattcaagacctg 34721822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 48176477 - 48176391
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    |||||||| |||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||| ||||    
T  48176477 ctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggcactagcggggctcgaacccggattctctcggatttaaga 48176391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 18116980 - 18117088
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||| |||| | |||||| ||||| |||| | ||||||||||||||||||||| ||||||||||| | ||||||||||||  |||||| |||||    
T  18116980 gcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggcactagcgtggctcgaacccgggttctctcggatt 18117079  T
Q  114 caagacctg 122  Q
    |||||||||    
T  18117080 caagacctg 18117088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 37095246 - 37095324
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctc 92  Q
    |||| ||||||||||   |||||| |||||||||| | |||||||||||||||||||||||||| |||||| |||||||    
T  37095246 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 45278523 - 45278441
Alignment:
Q  39 agcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacct 121  Q
    |||||||||| |  ||||||||||||| ||||| |||||||||||| ||||||||||||||  || ||| |||||||||||||    
T  45278523 agcacttacaaagataattacatttacttcccttcaaaggcactagcggggctcgaacccgggttatctcggattcaagacct 45278441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 245339 - 245383
Alignment:
Q  53 taattacatttacctccctccaaaggcactagtggggctcgaacc 97  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  245339 taattacatttacctccctccaagggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 23028760 - 23028686
Alignment:
Q  33 tcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctct 107  Q
    ||||||| |||||| | | |||||||||||||| |||||| ||||||| ||| || | ||||||||| |||||||    
T  23028760 tcaaaaaacacttataaaggtaattacatttacatccctctaaaggcattagaggagttcgaacccggattctct 23028686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 28407586 - 28407540
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaagg 78  Q
    |||||| |||||||||| ||||| ||||||||||||||||| |||||    
T  28407586 ctcaaagagcacttacaaaagtatttacatttacctccctctaaagg 28407540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 7417894 - 7417786
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||    
T  7417894 gcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 7417795  T
Q  114 caagacctg 122  Q
    |||||||||    
T  7417794 caagacctg 7417786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 8400951 - 8400843
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||    
T  8400951 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 8400852  T
Q  114 caagacctg 122  Q
    |||||||||    
T  8400851 caagacctg 8400843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 50726038 - 50726141
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    |||||| ||| ||||||||||| ||||||| ||||||||| |||||||| ||||||||| |||||  |||||||||||||||||||||| ||||||||||    
T  50726038 gaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacactaacggggctcgaacccgaattctctcggattcaaga 50726137  T
Q  119 cctg 122  Q
    ||||    
T  50726138 cctg 50726141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 50786810 - 50786707
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    |||||| ||| ||||||||||| ||||||| ||||||||| |||||||| ||||||||| |||||  |||||||||||||||||||||| ||||||||||    
T  50786810 gaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacactaacggggctcgaacccgaattctctcggattcaaga 50786711  T
Q  119 cctg 122  Q
    ||||    
T  50786710 cctg 50786707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 50823794 - 50823689
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||| |||||    
T  50823794 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactaacgggactcgaacccggattctctcggatt 50823695  T
Q  114 caagac 119  Q
    ||||||    
T  50823694 caagac 50823689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 50852066 - 50852171
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||| |||||    
T  50852066 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactaacgggactcgaacccggattctctcggatt 50852165  T
Q  114 caagac 119  Q
    ||||||    
T  50852166 caagac 50852171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 35198861 - 35198753
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||||||  |||||| |||||    
T  35198861 gcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaaggcattagtggggctcgaacccgggttctctcggatt 35198762  T
Q  114 caagacctg 122  Q
    |||||||||    
T  35198761 caagacctg 35198753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 48077977 - 48078085
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| |||||||||||  |||||| |||||||||| |  || |||||||||||| |||||||||||||||||| ||||||||||||| |||||| | |||    
T  48077977 gcagggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcgaatt 48078076  T
Q  114 caagacctg 122  Q
    |||||||||    
T  48078077 caagacctg 48078085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 52545389 - 52545309
Alignment:
Q  42 acttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    ||||||| ||||| ||||||||||||||||  ||||||||||| |||||||||||||||||| ||| ||||||||||||||    
T  52545389 acttacaaaagtatttacatttacctccctttaaaggcactagcggggctcgaacccgaattttctcggattcaagacctg 52545309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 55468077 - 55467990
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagac 119  Q
    |||||| |||||||||| | ||| ||||||||||||||||||||| ||| |||||||||||||||||| ||||||| | |||||||||    
T  55468077 ctcaaagagcacttacaaaggtatttacatttacctccctccaaacgcattagtggggctcgaacccggattctctcgaattcaagac 55467990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 43334090 - 43334192
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| ||||| |||||||||||||||||| ||| |||||| ||||||||||| ||  |||||| |||||    
T  43334090 gcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctccctcccaagacactagcggggctcgaactcgggttctctcggatt 43334189  T
Q  114 caa 116  Q
    |||    
T  43334190 caa 43334192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 22855958 - 22855875
Alignment:
Q  39 agcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||||||| | |||||||||||||||||||||||||| |||||| |||||||||||| |  |||||| | ||| ||||||||    
T  22855958 agcacttacaaaggtaattacatttacctccctccaaagacactagcggggctcgaacctgggttctctcgaatttaagacctg 22855875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 29635939 - 29635874
Alignment:
Q  39 agcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattc 104  Q
    |||||||||| | |||||||||||||||||||| |||||||||||| | |||||||| ||||||||    
T  29635939 agcacttacaaaggtaattacatttacctcccttcaaaggcactagcgaggctcgaatccgaattc 29635874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 42876306 - 42876229
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaac 96  Q
    |||||| |||||  ||||| |||||||||| | |||||||||||||||||| || |||| ||||||| ||||||||||    
T  42876306 gaagacattcaagttcaaagagcacttacaaaggtaattacatttacctccatctaaagacactagtcgggctcgaac 42876229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 22371784 - 22371832
Alignment:
Q  33 tcaaaaagcacttacagaagtaattacatttacctccctccaaaggcac 81  Q
    ||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  22371784 tcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 34824633 - 34824548
Alignment:
Q  33 tcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||| |||||||||| |  ||||||||||||||||||| |||||||||||  ||| ||||||| |   |||||| ||||||||||    
T  34824633 tcaaagagcacttacaaagataattacatttacctcccttcaaaggcactaacgggactcgaactcaggttctctcggattcaaga 34824548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 30970425 - 30970528
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    |||||||||| | |||||| |||||||||| | ||| |||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  30970425 gaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagtgaggctcgaacccggattctctcggattcaaga 30970524  T
Q  119 cctg 122  Q
    ||||    
T  30970525 cctg 30970528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 36192632 - 36192529
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||||||||   |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||    
T  36192632 gaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcgaattcaaga 36192533  T
Q  119 cctg 122  Q
    ||||    
T  36192532 cctg 36192529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 46494439 - 46494542
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||||||||   |||||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||    
T  46494439 gaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaaga 46494538  T
Q  119 cctg 122  Q
    ||||    
T  46494539 cctg 46494542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 51066589 - 51066481
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||||||| ||||||||||||||||||||||||| || |||||||||||| |||||| |||||    
T  51066589 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcactagcggagctcgaacccgagttctctcggatt 51066490  T
Q  114 caagacctg 122  Q
    |||||||||    
T  51066489 caagacctg 51066481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 51714000 - 51714109
Alignment:
Q  13 agcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggat 112  Q
    ||||| ||||||||||   |||||| |||||||||| | ||| ||| |||||||||||| |||||||||||||||||||||||||||  |||||| ||||    
T  51714000 agcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctcccttcaaaggcactagtggggctcgaacccgggttctctcggat 51714099  T
Q  113 tcaagacctg 122  Q
    ||||||||||    
T  51714100 tcaagacctg 51714109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 8740539 - 8740436
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||||||||   |||||| |||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||   ||||| ||||||||||    
T  8740539 gaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctctcggattcaaga 8740440  T
Q  119 cctg 122  Q
    ||||    
T  8740439 cctg 8740436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 50905839 - 50905736
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||||||||  ||||||| ||||| |||| |  |||||||||||||||| ||||||||||||||| |||||||||||||  ||||||| ||||||||||    
T  50905839 gaagaccttcggactcaaagagcacctacaaagataattacatttacctctctccaaaggcactagcggggctcgaacccagattctctcggattcaaga 50905740  T
Q  119 cctg 122  Q
    ||||    
T  50905739 cctg 50905736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 32139260 - 32139152
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    ||||||||||||||||  |||||| | |||||||| | |||||||||||||||||||||||||| |||||| |||| ||||||||   |||||| |||||    
T  32139260 gcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaagacactagcggggttcgaacccaggttctctcggatt 32139161  T
Q  114 caagacctg 122  Q
    || ||||||    
T  32139160 catgacctg 32139152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 39863816 - 39863922
Alignment:
Q  16 agagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattca 115  Q
    |||||||||||||    ||||| |||||||||| | |||||||||||||| |||||||||||||||||| ||||  ||||||||  |||||| |||||||    
T  39863816 agagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaaggcactagcggggtccgaacccgggttctctcggattca 39863915  T
Q  116 agacctg 122  Q
    |||||||    
T  39863916 agacctg 39863922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 22423473 - 22423386
Alignment:
Q  13 agcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccga 100  Q
    ||||| |||||||||| ||| |||| | |||||||| ||||| ||||||||||||||||||||||| ||||   ||||||||| ||||    
T  22423473 agcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccga 22423386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 2294784 - 2294854
Alignment:
Q  52 gtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||||||||||||| |||||||||||||||| |   ||||||||||| |||||| | ||||||||||||    
T  2294784 gtaattacatttaccttcctccaaaggcactagcgaaactcgaacccgagttctctcgaattcaagacctg 2294854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 4080589 - 4080651
Alignment:
Q  15 cagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaag 77  Q
    |||||||||| |||| ||||||| |||| ||||| | ||||||||||||||||||||||||||    
T  4080589 cagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctccctccaaag 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 7173621 - 7173729
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||| | |||||||||||| |||||||||||||| ||| || |||||    |||||| |||||    
T  7173621 gcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaaggcactagcgggtcttgaacctaggttctctcggatt 7173720  T
Q  114 caagacctg 122  Q
    |||||||||    
T  7173721 caagacctg 7173729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 55231783 - 55231715
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcact 82  Q
    |||| |||||| ||||  |||||| |||||||||| ||||| |||||||||||||||| ||||||||||    
T  55231783 gcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcccttcaaaggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 41523488 - 41523421
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtg 86  Q
    |||||||||| | |||||| |||||||| | | ||| |||||||||||||||||||||| ||||||||    
T  41523488 gaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccctccaaagacactagtg 41523421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 47627029 - 47627107
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctc 92  Q
    |||| |||||||||| |  ||||| || | ||| ||| ||| |||||||||||||||| ||||||||||||||||||||    
T  47627029 gcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctcccttcaaaggcactagtggggctc 47627107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 50399696 - 50399765
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaa 101  Q
    |||||| | |||||||| | ||| |||||||||||| |||||||  ||||||| ||||||||||||||||    
T  50399696 ctcaaagaacacttacaaaggtatttacatttaccttcctccaagagcactagcggggctcgaacccgaa 50399765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 29576511 - 29576444
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcac 81  Q
    |||| ||||||||||   |||||| |||||||||| |  || ||||||||||||||||||||||||||    
T  29576511 gcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccctccaaaggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 19723389 - 19723299
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| ||||||||||||||    
T  19723389 ctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctg 19723299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 4840236 - 4840129
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| |||||||||   ||||||| ||||||||||   ||||| ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||    
T  4840236 gcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggatt 4840137  T
Q  114 caagacct 121  Q
    ||| ||||    
T  4840136 caaaacct 4840129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 22711600 - 22711497
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||||||||   |||||| |||||||||| | ||| ||||||||||||||||||||||||| |||| || ||| ||||||| |||||| ||||||||||    
T  22711600 gaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagttggactcaaacccgagttctctcggattcaaga 22711501  T
Q  119 cctg 122  Q
    ||||    
T  22711500 cctg 22711497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 27881044 - 27881132
Alignment:
Q  34 caaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||| |||||||||| | ||| |||||||||||||||| |||||||||||| ||||||||||||||  ||||||  |||||||||||||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctg 27881132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 28021225 - 28021313
Alignment:
Q  34 caaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||| |||||||||| | ||| |||||||||||||||| |||||||||||| ||||||||||||||  ||||||  |||||||||||||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctg 28021313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 24475050 - 24475140
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||| | |||||||| | ||| ||||||||||||||||||||||||||||| || |||||||  |||||||| | ||||||||||||||    
T  24475050 ctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaattcgaattctatcggattcaagacctg 24475140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 11404097 - 11403989
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||| |||||||||||||||||||||| |||||| | |||||||||||   |||||| | |||    
T  11404097 gcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagacactagcgaggctcgaacccaggttctctcgaatt 11403998  T
Q  114 caagacctg 122  Q
    |||||||||    
T  11403997 caagacctg 11403989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 32296675 - 32296783
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | |||||||||||||||||||| ||||||||||||  ||||| |||||||  ||||||   |||    
T  32296675 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaaggcactagcagggcttgaacccgggttctctcaaatt 32296774  T
Q  114 caagacctg 122  Q
    |||||||||    
T  32296775 caagacctg 32296783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 28739602 - 28739705
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 118  Q
    ||||||||||   |||||| |||||||||| | ||| |||||||||| | ||||||||||||||||||||||| ||||||   |||||| | ||||||||    
T  28739602 gaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcctccaaaggcactagtggggcttgaacccaggttctctagaattcaaga 28739701  T
Q  119 cctg 122  Q
    ||||    
T  28739702 cctg 28739705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 17095646 - 17095568
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctc 92  Q
    |||| ||||||||||   |||||| |||| ||||| | ||||||||||||||||||||||||||||||||| |||||||    
T  17095646 gcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggcactagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 30682917 - 30682826
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctgc 123  Q
    |||||| | |||||||| ||||| ||||||||| ||| |||||||||||| |||||||||||||| ||   ||||||| |||||||| ||||    
T  30682917 ctcaaagaacacttacaaaagtatttacatttatctctctccaaaggcaccagtggggctcgaacacgggctctcttgaattcaagaactgc 30682826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 29767282 - 29767176
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| | |||||||| | |||||||  ||||||||||| |||||||||||| ||||||||| ||||  ||||||  ||||    
T  29767282 gcagggaagaccttcgggctcaaagaacacttacaaaggtaatta--tttacctcccttcaaaggcactagcggggctcgaccccgggttctctcagatt 29767185  T
Q  114 caagacctg 122  Q
    |||||||||    
T  29767184 caagacctg 29767176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 21355039 - 21355087
Alignment:
Q  33 tcaaaaagcacttacagaagtaattacatttacctccctccaaaggcac 81  Q
    ||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  21355039 tcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 41553381 - 41553274
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| |||||||||| | |||||| | |||||||| | ||| |||||||||| | ||||||||| || ||||||| ||||||| ||  |||||| | |||    
T  41553381 gcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttcctccaaagacattagtgggactcgaactcgggttctctcgaatt 41553282  T
Q  114 caagacct 121  Q
    ||||||||    
T  41553281 caagacct 41553274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 43288168 - 43288105
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaag 77  Q
    |||| ||||||||||  ||||||||| || ||||| | ||||||||||||||||||||||||||    
T  43288168 gcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaaag 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 36261724 - 36261679
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaag 77  Q
    |||||| |||||||||| | ||||||||||||||||||||||||||    
T  36261724 ctcaaagagcacttacaaaggtaattacatttacctccctccaaag 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 11610351 - 11610268
Alignment:
Q  39 agcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||||||| |  || ||| ||||||||  ||||||||||||||| | |||||||| ||||  ||||| ||||||||||||||    
T  11610351 agcacttacaaagatatttatatttacctttctccaaaggcactagcgaggctcgaatccgagatctctcggattcaagacctg 11610268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 20983057 - 20983147
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||| |||||||||| | |||||| |||||||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||||||    
T  20983057 ctcaaagagcacttacaaatgtaattgcatttacctctctccgaaggcactagcggggctcgaacccggattctcttggattcaagacctg 20983147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 17064419 - 17064311
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   || ||| |||||||||| | ||| ||||||||||||||||||||||||||||| | ||||||||||||  |||||| |||||    
T  17064419 gcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcgaggctcgaacccgggttctctcggatt 17064320  T
Q  114 caagacctg 122  Q
    |||||||||    
T  17064319 caagacctg 17064311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 37976596 - 37976534
Alignment:
Q  60 atttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||||||||| |||| ||||||| |||||||||||||   |||||| ||||||||||||||    
T  37976596 atttacctcccttcaaatgcactagcggggctcgaacccaggttctctcggattcaagacctg 37976534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 35237103 - 35237164
Alignment:
Q  58 acatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagac 119  Q
    |||||||||||||| ||||| |||||| |||||||||| ||  ||||||| | |||||||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcgaattcaagac 35237164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 35163786 - 35163894
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| ||||||||||   |||||| |||||||||| | ||| ||||||||||||||||||||||||| |||||||||||||||||   |||||| |||||    
T  35163786 gcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagtggggctcgaaccctggttctctcggatt 35163885  T
Q  114 caagacctg 122  Q
    |||||||||    
T  35163886 caagacctg 35163894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 14496406 - 14496341
Alignment:
Q  56 ttacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacct 14496341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 2711770 - 2711878
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggatt 113  Q
    |||| |||||||||| | |||||| |||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||| ||   |||| | |||||    
T  2711770 gcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaaagcactagtggggctcgaatccaggttctatcggatt 2711869  T
Q  114 caagacctg 122  Q
    |||||||||    
T  2711870 caagacctg 2711878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 19686881 - 19686971
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||| |||||||||| | |||||||||||||||||||| |||||||||||| |||||||||||||   ||||||  |||||||||||||    
T  19686881 ctcaaagagcacttacaaaggtaattacatttacctccctacaaaggcactagaggggctcgaacccaggttctctcagattcaagacctg 19686971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 20685421 - 20685346
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtgggg 89  Q
    |||| ||||||||||   |||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  20685421 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcgggg 20685346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 24336711 - 24336641
Alignment:
Q  14 gcagagaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactag 84  Q
    |||| ||||| |||||  |||||||| |||||||| ||||| ||||||||||||||||||||||| |||||    
T  24336711 gcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactag 24336641  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 14505600 - 14505640
Alignment:
Q  55 attacatttacctccctccaaaggcactagtggggctcgaa 95  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  14505600 attacatttacctccctccaaaagcactagcggggctcgaa 14505640  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 15070194 - 15070152
Alignment:
Q  41 cacttacagaagtaattacatttacctccctccaaaggcacta 83  Q
    |||||||| | ||||||| ||||||||||||||||||||||||    
T  15070194 cacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 17948771 - 17948706
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactag 84  Q
    ||||||||||   |||||| |||||||||| | ||| ||||||||||||| |||||||| ||||||    
T  17948771 gaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaaagacactag 17948706  T

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Target: scaffold0021 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 107745 - 107835
Alignment:
Q  32 ctcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 122  Q
    |||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||| | ||||||||||||    
T  107745 ctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaactcgggttctctcgaattcaagacctg 107835  T

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Target: scaffold0691 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 7010 - 7098
Alignment:
Q  19 gaagaccttcaaactcaaaaagcacttacagaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgaattctct 107  Q
    ||||||||||  ||||||| | ||||| || | |||||||||||||| |||||||||| ||||||| ||| |||||||||| |||||||    
T  7010 gaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccggattctct 7098  T

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