View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19416_high_4 (Length: 514)

Name: NF19416_high_4
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19416_high_4
NF19416_high_4
[»] chr4 (21 HSPs)
chr4 (2-313)||(22870290-22870601)
chr4 (310-500)||(22869519-22869709)
chr4 (395-499)||(22838209-22838313)
chr4 (16-144)||(29669533-29669667)
chr4 (14-144)||(53739981-53740117)
chr4 (14-144)||(45427105-45427241)
chr4 (14-130)||(50858141-50858263)
chr4 (14-110)||(990872-990973)
chr4 (121-182)||(27117186-27117247)
chr4 (74-111)||(52810771-52810808)
chr4 (41-144)||(51469596-51469703)
chr4 (14-68)||(990721-990776)
chr4 (9-55)||(26943034-26943081)
chr4 (41-110)||(3137518-3137588)
chr4 (144-178)||(22870740-22870774)
chr4 (121-182)||(21183565-21183626)
chr4 (151-179)||(12006287-12006315)
chr4 (48-96)||(21497940-21497988)
chr4 (150-182)||(28232092-28232124)
chr4 (138-182)||(32973157-32973201)
chr4 (74-102)||(46529069-46529097)
[»] chr7 (12 HSPs)
chr7 (14-144)||(40121787-40121923)
chr7 (14-130)||(30296442-30296564)
chr7 (41-135)||(41670676-41670775)
chr7 (138-182)||(41489973-41490017)
chr7 (9-55)||(3973054-3973101)
chr7 (151-182)||(28359166-28359197)
chr7 (151-182)||(43295521-43295552)
chr7 (152-182)||(10406578-10406608)
chr7 (150-180)||(12305039-12305069)
chr7 (132-182)||(42440895-42440945)
chr7 (11-55)||(21033975-21034020)
chr7 (74-102)||(36270616-36270644)
[»] chr6 (9 HSPs)
chr6 (16-144)||(8143817-8143951)
chr6 (22-130)||(21067234-21067348)
chr6 (74-130)||(21089083-21089139)
chr6 (74-135)||(28068338-28068399)
chr6 (36-182)||(18286680-18286824)
chr6 (11-111)||(1205715-1205817)
chr6 (10-67)||(1206028-1206086)
chr6 (41-144)||(19753801-19753909)
chr6 (9-52)||(130832-130875)
[»] chr5 (6 HSPs)
chr5 (14-144)||(13843812-13843948)
chr5 (10-98)||(31973289-31973378)
chr5 (41-144)||(27760190-27760298)
chr5 (75-144)||(1028328-1028397)
chr5 (152-182)||(4796440-4796470)
chr5 (74-111)||(18541871-18541908)
[»] chr2 (12 HSPs)
chr2 (14-144)||(3976324-3976460)
chr2 (14-144)||(21214054-21214190)
chr2 (25-111)||(5511981-5512066)
chr2 (76-144)||(17508909-17508977)
chr2 (15-144)||(3976857-3976992)
chr2 (74-136)||(3976704-3976766)
chr2 (74-111)||(14289068-14289105)
chr2 (133-178)||(45636205-45636250)
chr2 (151-182)||(9889310-9889341)
chr2 (151-182)||(36901224-36901255)
chr2 (151-182)||(36901458-36901489)
chr2 (126-179)||(13744116-13744169)
[»] chr8 (5 HSPs)
chr8 (41-144)||(21653442-21653550)
chr8 (10-96)||(34248237-34248324)
chr8 (41-144)||(21653603-21653711)
chr8 (10-55)||(39590593-39590639)
chr8 (150-182)||(12605653-12605685)
[»] chr3 (9 HSPs)
chr3 (14-144)||(44573441-44573577)
chr3 (41-144)||(50056954-50057062)
chr3 (14-144)||(44573754-44573890)
chr3 (5-55)||(662621-662671)
chr3 (78-144)||(14170238-14170304)
chr3 (150-182)||(34250342-34250374)
chr3 (152-182)||(40337868-40337898)
chr3 (74-102)||(16045291-16045319)
chr3 (74-102)||(16060804-16060832)
[»] chr1 (5 HSPs)
chr1 (81-144)||(19614126-19614189)
chr1 (10-144)||(19810861-19810996)
chr1 (74-108)||(20735673-20735707)
chr1 (3-41)||(34626931-34626969)
chr1 (10-101)||(41590391-41590483)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 2 - 313
Target Start/End: Complemental strand, 22870601 - 22870290
Alignment:
Q  2 cagatggtgcaattaggcggctaggggcggaccacaatgaggcggaatttccaatacactccctcacacttgggcccaatgggcctgaagcgtggacgat 101  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22870601 cagatggtgcaattaggcggctaggggtggaccacaatgaggcggaatttccaatacactccctcacacttgggcccaatgggcctgaagcgtggacgat 22870502  T
Q  102 gtgggaagcctagcaatatatctaggatacgctctaataccatatttgttttttatattgggcctaactcatccttacaaacaccactgttctacaaatc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  22870501 gtgggaagcctagcaatatatctaggatacgctctaataccatattagttttttatgttgggcctaactcatccttacaaacaccactgctctacaaatc 22870402  T
Q  202 aaggttttatctacttttctggagctgttcatcccattggaattggatgctgcttccttgattaattgggaagaatttggatctgtttcataattatctg 301  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  22870401 aaggctttatctacttttctggagctgttcatcccattggaattggatgctgcttccttgattaattgggaagaattaggatttgtttcataattatctg 22870302  T
Q  302 ttgagagtgatg 313  Q
    ||||||||||||    
T  22870301 ttgagagtgatg 22870290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 310 - 500
Target Start/End: Complemental strand, 22869709 - 22869519
Alignment:
Q  310 gatgtaatcctctttaattgagtatcaatgtaatcaaaatgttctctatcacaaagttagttatgattcaatctcagaatttacaagctgggaaggaaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22869709 gatgtaatcctctttaattgagtatcaatgtaatcaaaatgttctctatcacaaagttagttatgattcaatctcagaatttacaagcagggaaggaaaa 22869610  T
Q  410 ttttgcaatagtttcaataggaacgataatggagggtccatttgtgccaaggagttgtacgagaaaatgatttgatggcttggatgattct 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22869609 ttttgcaatagtttcaataggaacgataatggagggtccatttgtgccaaggagttgtacgagaaaatgatttgatggcttggatgattct 22869519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 395 - 499
Target Start/End: Complemental strand, 22838313 - 22838209
Alignment:
Q  395 agctgggaaggaaaattttgcaatagtttcaataggaacgataatggagggtccatttgtgccaaggagttgtacgagaaaatgatttgatggcttggat 494  Q
    ||||||||||| | ||||| |||||||  |||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  22838313 agctgggaagggatatttttcaatagtcacaattggaacgataatggagggtccatttgtgccaaggagttgcacaagaaaatgatttgatggcttggat 22838214  T
Q  495 gattc 499  Q
     ||||    
T  22838213 tattc 22838209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 29669533 - 29669667
Alignment:
Q  16 aggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaag 109  Q
    ||||| ||||||||||||| |||| | |||||||||||||| |||| ||||||| |||      ||||||||||||||||||||||||||||| ||||||    
T  29669533 aggcgactaggggcggaccgcaattaaggcggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaag 29669632  T
Q  110 cctagcaatatatctaggatacgctctaataccat 144  Q
    || | ||||| |||||||||| ||||| |||||||    
T  29669633 cccaacaatagatctaggataggctctgataccat 29669667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 53740117 - 53739981
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtggga 107  Q
    ||||||| ||||||||||||| |||| | |||||||||||||| ||   ||||||| |||      ||||||||||||||||||||||||||||| ||||    
T  53740117 ttaggcgactaggggcggaccgcaattaaggcggaatttccaacacctcccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcggga 53740018  T
Q  108 agcctagcaatatatctaggatacgctctaataccat 144  Q
    |||| ||| ||| |||||||||| ||||| |||||||    
T  53740017 agcccagcgatagatctaggataggctctgataccat 53739981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 45427105 - 45427241
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtggga 107  Q
    ||||||| ||||||||||||  |||| | |||||||||||||| |||| ||||||  |||      ||||||||||||||||||||||||||||| ||||    
T  45427105 ttaggcgactaggggcggacagcaattaaggcggaatttccaacacaccccctcatgcttcagcccggcccaatgggcctgaagcgtggacgatgcggga 45427204  T
Q  108 agcctagcaatatatctaggatacgctctaataccat 144  Q
    |||| | | ||| |||||||||| ||||| |||||||    
T  45427205 agcccaacgatagatctaggataggctctgataccat 45427241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 50858263 - 50858141
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtggga 107  Q
    ||||||| ||||||| ||||| |||| | |||||||||||||| ||||  |||||| |||      |||||||||||||||||||||||||||||  |||    
T  50858263 ttaggcgactaggggtggaccgcaattaaggcggaatttccaacacacctcctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcagga 50858164  T
Q  108 agcctagcaatatatctaggata 130  Q
    |||| | | ||| ||||||||||    
T  50858163 agcccaacgatagatctaggata 50858141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 990973 - 990872
Alignment:
Q  14 ttaggcggctaggggcggaccacaatgaggcggaatttccaatacactccctcacacttgggccc-----aatgggcctgaagcgtggacgatgtgggaa 108  Q
    ||||||| ||||||||||||| |||| | |  |||||||||| |||| ||||||| |||  ||||     |||||||||||||||||||||||| |||||    
T  990973 ttaggcgactaggggcggaccgcaattaaggcgaatttccaacacaccccctcacgcttcagcccggcctaatgggcctgaagcgtggacgatgcgggaa 990874  T
Q  109 gc 110  Q
    ||    
T  990873 gc 990872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 27117186 - 27117247
Alignment:
Q  121 atctaggatacgctctaataccatatttgttttttatattgggcctaactcatccttacaaa 182  Q
    ||||||| || |||| ||||||||||| | |||||||| |||| ||||||||||||||||||    
T  27117186 atctagggtaggctccaataccatattaggtttttataatgggtctaactcatccttacaaa 27117247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 52810771 - 52810808
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatgtgggaagcc 111  Q
    |||||||||||||||||||||||||||||| |||||||    
T  52810771 ggcccaatgggcctgaagcgtggacgatgtcggaagcc 52810808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 51469703 - 51469596
Alignment:
Q  41 aggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctc 135  Q
    ||||||||||||||| |||| ||||||| |||      |||||||||| |||||||||||||||||| ||||| || | | ||| |||||||||| ||||    
T  51469703 aggcggaatttccaacacaccccctcacgcttcagcccggcccaatgg-cctgaagcgtggacgatgcgggaaacccaacgatagatctaggataggctc 51469605  T
Q  136 taataccat 144  Q
    | |||||||    
T  51469604 tgataccat 51469596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 990776 - 990721
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcac 68  Q
    ||||||| ||||||||||||| |||| | |||||||||||||| ||||||||||||    
T  990776 ttaggcgactaggggcggaccgcaattaaggcggaatttccaacacactccctcac 990721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 26943034 - 26943081
Alignment:
Q  9 tgcaattaggcggctaggggcggaccacaatg-aggcggaatttccaa 55  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||    
T  26943034 tgcaattaggcggctaggggcggaccgaaatgtaggcggaatttccaa 26943081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 3137518 - 3137588
Alignment:
Q  41 aggcggaatttccaatacactccctcacac-ttgggcccaatgggcctgaagcgtggacgatgtgggaagc 110  Q
    ||||||||||||||| || | ||||||||| |||| ||||||| |||||||||||||| || | |||||||    
T  3137518 aggcggaatttccaacaccccccctcacactttggccccaatgagcctgaagcgtggaggacgagggaagc 3137588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 22870774 - 22870740
Alignment:
Q  144 tatttgttttttatattgggcctaactcatcctta 178  Q
    |||| ||||||||||||||||||||||||||||||    
T  22870774 tattagttttttatattgggcctaactcatcctta 22870740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 21183565 - 21183626
Alignment:
Q  121 atctaggatacgctctaataccatatttgttttttatattgggcctaactcatccttacaaa 182  Q
    ||||||| || |||| ||||||||||| | |||||||| |||| |||||||||| |||||||    
T  21183565 atctagggtaggctccaataccatattaggtttttataatgggtctaactcatcattacaaa 21183626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 12006287 - 12006315
Alignment:
Q  151 tttttatattgggcctaactcatccttac 179  Q
    |||||||||||||||||||||||||||||    
T  12006287 tttttatattgggcctaactcatccttac 12006315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 21497940 - 21497988
Alignment:
Q  48 atttccaatacactccctcacacttgggcccaatgggcctgaagcgtgg 96  Q
    |||||||| |||| ||||||| || ||||||||||||| ||||||||||    
T  21497940 atttccaacacaccccctcacgctcgggcccaatgggcatgaagcgtgg 21497988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 28232092 - 28232124
Alignment:
Q  150 ttttttatattgggcctaactcatccttacaaa 182  Q
    |||||||||||||| ||||||||||||||||||    
T  28232092 ttttttatattgggtctaactcatccttacaaa 28232124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 32973201 - 32973157
Alignment:
Q  138 ataccatatttgttttttatattgggcctaactcatccttacaaa 182  Q
    |||||||||| | |||||||||| || ||||||||||||||||||    
T  32973201 ataccatattaggtttttatatttggtctaactcatccttacaaa 32973157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 46529069 - 46529097
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatg 102  Q
    |||||||||||||||||||||||||||||    
T  46529069 ggcccaatgggcctgaagcgtggacgatg 46529097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 40121787 - 40121923
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtggga 107  Q
    ||||||| ||||||||||||| |||| | |||||||||||||| |||| ||||||| |||      ||||||||||||||||||||||||||||| ||||    
T  40121787 ttaggcgactaggggcggaccgcaattaaggcggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcggga 40121886  T
Q  108 agcctagcaatatatctaggatacgctctaataccat 144  Q
    |||| | | ||| |||||||||| ||||| |||||||    
T  40121887 agccaatcgatagatctaggataggctctgataccat 40121923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 30296564 - 30296442
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtggga 107  Q
    ||||||| ||||||||||| |||||| | |||||||||||||| |||| ||||||| |||      |||| |||||||||||||||||||||||| ||||    
T  30296564 ttaggcgactaggggcggatcacaattaaggcggaatttccaacacaccccctcacgcttcagcctggccaaatgggcctgaagcgtggacgatgcggga 30296465  T
Q  108 agcctagcaatatatctaggata 130  Q
    |||| | ||||| ||||||||||    
T  30296464 agcccaacaataaatctaggata 30296442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 41670775 - 41670676
Alignment:
Q  41 aggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctc 135  Q
    ||||||||||||||| |||| ||||||| |||      |||||||||||||||||| ||||||||||||||||||| |   ||| |||||||||||||||    
T  41670775 aggcggaatttccaacacacaccctcacgcttcagcccggcccaatgggcctgaagtgtggacgatgtgggaagcccaatgatagatctaggatacgctc 41670676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 41490017 - 41489973
Alignment:
Q  138 ataccatatttgttttttatattgggcctaactcatccttacaaa 182  Q
    |||||||||| | ||||||||||||||||| ||||||||||||||    
T  41490017 ataccatattaggtttttatattgggcctagctcatccttacaaa 41489973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 3973101 - 3973054
Alignment:
Q  9 tgcaattaggcggctaggggcggaccacaatg-aggcggaatttccaa 55  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  3973101 tgcaattaggcggctaggggtggaccgcaatgaaggcggaatttccaa 3973054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 28359197 - 28359166
Alignment:
Q  151 tttttatattgggcctaactcatccttacaaa 182  Q
    ||||||||||||||||||||||||||||||||    
T  28359197 tttttatattgggcctaactcatccttacaaa 28359166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 43295552 - 43295521
Alignment:
Q  151 tttttatattgggcctaactcatccttacaaa 182  Q
    ||||||||||||||||||||||||||||||||    
T  43295552 tttttatattgggcctaactcatccttacaaa 43295521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 182
Target Start/End: Original strand, 10406578 - 10406608
Alignment:
Q  152 ttttatattgggcctaactcatccttacaaa 182  Q
    |||||||||||||||||||||||||||||||    
T  10406578 ttttatattgggcctaactcatccttacaaa 10406608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 180
Target Start/End: Original strand, 12305039 - 12305069
Alignment:
Q  150 ttttttatattgggcctaactcatccttaca 180  Q
    |||||||||||||||||||||||||||||||    
T  12305039 ttttttatattgggcctaactcatccttaca 12305069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 42440945 - 42440895
Alignment:
Q  132 gctctaataccatatttgttttttatattgggcctaactcatccttacaaa 182  Q
    |||||||||||||||| |  ||||||| || ||||||||||||||||||||    
T  42440945 gctctaataccatattagggttttatactgagcctaactcatccttacaaa 42440895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 21033975 - 21034020
Alignment:
Q  11 caattaggcggctaggggcggaccacaatg-aggcggaatttccaa 55  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||||    
T  21033975 caattaggtggctaggggcggaccgcaatgaaggcggaatttccaa 21034020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 36270616 - 36270644
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatg 102  Q
    |||||||||||||||||||||||||||||    
T  36270616 ggcccaatgggcctgaagcgtggacgatg 36270644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 8143951 - 8143817
Alignment:
Q  16 aggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaag 109  Q
    ||||| |||||||| |||| |||| | |||||||||||||| |||| ||||||| |||      ||||||||||||||||||||||||||||| ||||||    
T  8143951 aggcgactaggggcagaccgcaattaaggcggaatttccaacacacaccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaag 8143852  T
Q  110 cctagcaatatatctaggatacgctctaataccat 144  Q
    || | ||||| |||||||||| ||||| |||||||    
T  8143851 cccaacaatagatctaggataggctctgataccat 8143817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 21067234 - 21067348
Alignment:
Q  22 ctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaagcctagc 115  Q
    ||||||||||||| |||| | |||||||||||||| |||| ||||||| ||       |||||||||||||||||||||||||||||||||||||| | |    
T  21067234 ctaggggcggaccgcaattaaggcggaatttccaacacaccccctcacgctccagcccggcccaatgggcctgaagcgtggacgatgtgggaagcccaac 21067333  T
Q  116 aatatatctaggata 130  Q
    |||| ||||||||||    
T  21067334 aatagatctaggata 21067348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 21089083 - 21089139
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggata 130  Q
    ||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||    
T  21089083 ggcccaatgggcctgaagcgtggacgatgcgggaagcccaacaatatatctaggata 21089139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 28068338 - 28068399
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctc 135  Q
    |||||||||||||||||||||||||||||||||||||| | | ||| |||||||||| ||||    
T  28068338 ggcccaatgggcctgaagcgtggacgatgtgggaagcccaacgatagatctaggataggctc 28068399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 18286824 - 18286680
Alignment:
Q  36 caatgaggcggaatttccaatacactccctcacacttgggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctc 135  Q
    |||| ||||||||||||||| |||| | ||||| || |||   |||| |||||||| || ||| ||| ||||||||   ||| | ||||| |||| ||||    
T  18286824 caattaggcggaatttccaacacacccgctcacgctcgggt--aatgagcctgaagtgttgacaatgcgggaagcccgacaacagatctacgataggctc 18286727  T
Q  136 taataccatatttgttttttatattgggcctaactcatccttacaaa 182  Q
    | ||| ||| || | ||||||||||||||||||||||||||||||||    
T  18286726 tgatatcatcttaggtttttatattgggcctaactcatccttacaaa 18286680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 1205715 - 1205817
Alignment:
Q  11 caattaggcggctaggggcggaccacaatg-aggcggaatttccaatacactccctcacacttggg-cccaatgggcctgaagcgtggacgatgtgggaa 108  Q
    |||||||||||||||||| ||||  ||||| ||| ||||||||||| |||| ||||||| || ||| |||||||  ||||||| |||| ||||| |||||    
T  1205715 caattaggcggctaggggtggactgcaatgaaggtggaatttccaacacacaccctcacgctcgggccccaatgaacctgaagtgtgggcgatgcgggaa 1205814  T
Q  109 gcc 111  Q
    |||    
T  1205815 gcc 1205817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 1206028 - 1206086
Alignment:
Q  10 gcaattaggcggctaggggcggaccacaatg-aggcggaatttccaatacactccctca 67  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||||| |||| ||||||    
T  1206028 gcaattaggcggctaggggcggaccgcaatgaaggcagaatttccaacacacaccctca 1206086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 19753801 - 19753909
Alignment:
Q  41 aggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctc 135  Q
    ||||||||||||||| |||| ||||||| |||      ||||||||||||||||||| | ||||||| |||||| | |   ||| |||||||||| ||||    
T  19753801 aggcggaatttccaacacacaccctcacgcttcagcccggcccaatgggcctgaagcattgacgatgcgggaagaccaatgatagatctaggataggctc 19753900  T
Q  136 taataccat 144  Q
    |||||||||    
T  19753901 taataccat 19753909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 130832 - 130875
Alignment:
Q  9 tgcaattaggcggctaggggcggaccacaatgaggcggaatttc 52  Q
    |||| |||||||||||||||||| |||||||| |||||||||||    
T  130832 tgcagttaggcggctaggggcgggccacaatggggcggaatttc 130875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 13843948 - 13843812
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtggga 107  Q
    ||||||| |||||||||||||||||| | || ||||||||||| |||| ||||||| |||      |||||||||||||||||||||||||||||  |||    
T  13843948 ttaggcgactaggggcggaccacaattaaggtggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcagga 13843849  T
Q  108 agcctagcaatatatctaggatacgctctaataccat 144  Q
    |||| | | ||| |||||||||| ||||| |||||||    
T  13843848 agcccaacgatagatctaggataggctctgataccat 13843812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 31973289 - 31973378
Alignment:
Q  10 gcaattaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttgggcccaatgggcctgaagcgtggac 98  Q
    |||||||||||||| |||||||||  |||||| ||| |||||||||| |||||||||||| || |||||||||| ||| |||||||||||    
T  31973289 gcaattaggcggctgggggcggactgcaatgaaggcagaatttccaacacactccctcacgctcgggcccaatgagccagaagcgtggac 31973378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 27760298 - 27760190
Alignment:
Q  41 aggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctc 135  Q
    ||||||||||||||| |||| ||||||| |||      ||||||||||||||||||||||||||||| |||||||| | | ||| |||||||||| |||     
T  27760298 aggcggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacgatagatctaggataggctt 27760199  T
Q  136 taataccat 144  Q
    | |||||||    
T  27760198 tgataccat 27760190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 1028328 - 1028397
Alignment:
Q  75 gcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctctaataccat 144  Q
    |||||||||| ||||||||||||||||| |||||||| | | ||| |||||||||| ||||| |||||||    
T  1028328 gcccaatgggtctgaagcgtggacgatgcgggaagcccaacgatagatctaggataggctctgataccat 1028397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 182
Target Start/End: Complemental strand, 4796470 - 4796440
Alignment:
Q  152 ttttatattgggcctaactcatccttacaaa 182  Q
    |||||||||||||||||||||||||||||||    
T  4796470 ttttatattgggcctaactcatccttacaaa 4796440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 18541908 - 18541871
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatgtgggaagcc 111  Q
    |||||||||||||||||||||||||||||  |||||||    
T  18541908 ggcccaatgggcctgaagcgtggacgatgcaggaagcc 18541871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 3976324 - 3976460
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtggga 107  Q
    ||||||| |||||||||||||||||| | || | ||||||||| |||| |||| ||||||      ||||||| ||||||||||||||||||||||||||    
T  3976324 ttaggcgactaggggcggaccacaattaaggtgaaatttccaacacaccccctaacacttcagcccggcccaacgggcctgaagcgtggacgatgtggga 3976423  T
Q  108 agcctagcaatatatctaggatacgctctaataccat 144  Q
    |||| | | ||| |||||||||| ||||| |||||||    
T  3976424 agcccaacgatagatctaggataggctctgataccat 3976460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 21214054 - 21214190
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtggga 107  Q
    ||||||| |||||||||||||||||| | |||||||||||||| |||| ||||||| |||      ||||||||||||||||||||||||||||| ||||    
T  21214054 ttaggcgactaggggcggaccacaattaaggcggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcggga 21214153  T
Q  108 agcctagcaatatatctaggatacgctctaataccat 144  Q
    |||| | | ||  |||||||||| ||| | |||||||    
T  21214154 agcccaacgattgatctaggataggctttgataccat 21214190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 5511981 - 5512066
Alignment:
Q  25 ggggcggaccacaatga-ggcggaatttccaatacactccctcacacttgggcccaatgggcctgaagcgtggacgatgtgggaagcc 111  Q
    ||||||||||||||||| ||||||||||| ||  ||| |||||||  |||| ||||||| || |||||||||||||||| ||||||||    
T  5511981 ggggcggaccacaatgaaggcggaatttcaaa--caccccctcacggttggtcccaatgagcttgaagcgtggacgatgcgggaagcc 5512066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 17508977 - 17508909
Alignment:
Q  76 cccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctctaataccat 144  Q
    ||||||||||||||||||||||| |||||| ||||| | | ||| |||||||||| ||||| |||||||    
T  17508977 cccaatgggcctgaagcgtggacaatgtggaaagcccaacgatagatctaggataggctctgataccat 17508909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 3976857 - 3976992
Alignment:
Q  15 taggcggctaggggcggaccacaatgag-gcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaa 108  Q
    |||||| ||||||||||| | |||| |  ||||||||||||| |||| ||||||| |||      ||||||||||||||||||||||||| |||  ||||    
T  3976857 taggcgactaggggcggatcgcaattaaagcggaatttccaacacacaccctcacgcttcagcccggcccaatgggcctgaagcgtggacaatgcaggaa 3976956  T
Q  109 gcctagcaatatatctaggatacgctctaataccat 144  Q
    ||| | | ||| |||||||||| ||||| |||||||    
T  3976957 gcccaacgatagatctaggataggctctgataccat 3976992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 3976704 - 3976766
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctct 136  Q
    ||||||| ||||||||||||||||||||| |||||||| | | ||| |||||||||| |||||    
T  3976704 ggcccaacgggcctgaagcgtggacgatgcgggaagcccaacgatagatctaggataggctct 3976766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 14289105 - 14289068
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatgtgggaagcc 111  Q
    |||||||||||||||||||||||||||||| |||||||    
T  14289105 ggcccaatgggcctgaagcgtggacgatgtaggaagcc 14289068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 45636205 - 45636250
Alignment:
Q  133 ctctaataccatatttgttttttatattgggcctaactcatcctta 178  Q
    |||| |||||||||| | ||||||||||||||||||||||||||||    
T  45636205 ctctgataccatattaggtttttatattgggcctaactcatcctta 45636250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 182
Target Start/End: Original strand, 9889310 - 9889341
Alignment:
Q  151 tttttatattgggcctaactcatccttacaaa 182  Q
    ||||||||||||||||||||||||||||||||    
T  9889310 tttttatattgggcctaactcatccttacaaa 9889341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 36901255 - 36901224
Alignment:
Q  151 tttttatattgggcctaactcatccttacaaa 182  Q
    ||||||||||||||||||||||||||||||||    
T  36901255 tttttatattgggcctaactcatccttacaaa 36901224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 36901489 - 36901458
Alignment:
Q  151 tttttatattgggcctaactcatccttacaaa 182  Q
    ||||||||||||||||||||||||||||||||    
T  36901489 tttttatattgggcctaactcatccttacaaa 36901458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 13744169 - 13744116
Alignment:
Q  126 ggatacgctctaataccatatttgttttttatattgggcctaactcatccttac 179  Q
    ||||| ||||| ||||| |||| | |||| ||||||||||||||||||||||||    
T  13744169 ggataggctctgataccctattaggttttcatattgggcctaactcatccttac 13744116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 21653550 - 21653442
Alignment:
Q  41 aggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctc 135  Q
    |||||||||||||||||||| ||||||| |||      |||||||||| |||||||||||||||||| |||||||| | | ||| |||||||||| ||||    
T  21653550 aggcggaatttccaatacaccccctcacgcttcagcccggcccaatggtcctgaagcgtggacgatgcgggaagcccaacgatagatctaggataggctc 21653451  T
Q  136 taataccat 144  Q
    | |||||||    
T  21653450 tgataccat 21653442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 34248324 - 34248237
Alignment:
Q  10 gcaattaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttgggcccaatgggcctgaagcgtgg 96  Q
    ||||||||||| |||||||||||   |||| | |||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||    
T  34248324 gcaattaggcgactaggggcggattgcaataaaggcggaatttccaacacaccccctcacacttgggctcaatgggccagaagcgtgg 34248237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 21653711 - 21653603
Alignment:
Q  41 aggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctc 135  Q
    |||||||||||| ||||||| ||||||| |||      |||||||||| ||||||||||||||||||  ||||||| |   ||| |||||||||| ||||    
T  21653711 aggcggaatttcaaatacaccccctcacgcttcagcccggcccaatggtcctgaagcgtggacgatgcaggaagcccaatgatagatctaggataggctc 21653612  T
Q  136 taataccat 144  Q
    | |||||||    
T  21653611 tgataccat 21653603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 39590639 - 39590593
Alignment:
Q  10 gcaattaggcggctaggggcggaccacaat-gaggcggaatttccaa 55  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  39590639 gcaattaggcggctaggggcggaccgcaatagaggcagaatttccaa 39590593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 12605685 - 12605653
Alignment:
Q  150 ttttttatattgggcctaactcatccttacaaa 182  Q
    ||||||||||| |||||||||||||||||||||    
T  12605685 ttttttatatttggcctaactcatccttacaaa 12605653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 44573577 - 44573441
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtggga 107  Q
    ||||||| ||||||||||||| |||| | |||||||| ||||| |||| ||||||| |||      ||||||||||||||||||||||||||||||||||    
T  44573577 ttaggcgactaggggcggaccgcaattaaggcggaatctccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgtggga 44573478  T
Q  108 agcctagcaatatatctaggatacgctctaataccat 144  Q
    ||||   | ||| |||||| ||| ||||| |||||||    
T  44573477 agcccgacgatagatctagcataggctctgataccat 44573441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 50057062 - 50056954
Alignment:
Q  41 aggcggaatttccaatacactccctcacacttg-----ggcccaatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctc 135  Q
    ||||||||||||||| |||| ||||||| |||      ||||||||||||||||||||||||||||| |||||||| | | ||| |||||||||| ||||    
T  50057062 aggcggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacgatagatctaggataggctc 50056963  T
Q  136 taataccat 144  Q
    | |||||||    
T  50056962 tgataccat 50056954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 44573890 - 44573754
Alignment:
Q  14 ttaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttgggccc-----aatgggcctgaagcgtggacgatgtggga 107  Q
    ||||||| ||||||||||||| |||| | ||||||||||| || |||| ||||||| |||  ||||     ||||| |||||||||||||||||| ||||    
T  44573890 ttaggcgactaggggcggaccgcaattaaggcggaatttctaacacaccccctcacgcttcagcccggcttaatggccctgaagcgtggacgatgcggga 44573791  T
Q  108 agcctagcaatatatctaggatacgctctaataccat 144  Q
    ||||   | ||| |||||||||| ||||| |||||||    
T  44573790 agcccgacgatagatctaggataggctctgataccat 44573754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 662671 - 662621
Alignment:
Q  5 atggtgcaattaggcggctaggggcggaccacaatgaggcggaatttccaa 55  Q
    |||| ||||||||||| ||||||||||||| |||| |||||||||||||||    
T  662671 atggcgcaattaggcgactaggggcggaccgcaattaggcggaatttccaa 662621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 14170238 - 14170304
Alignment:
Q  78 caatgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctctaataccat 144  Q
    ||||||||||||||||||||||||| |||||| | | ||||| | |||||||| ||||| |||||||    
T  14170238 caatgggcctgaagcgtggacgatgcgggaagtccaacaatagaactaggataggctctgataccat 14170304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 34250342 - 34250374
Alignment:
Q  150 ttttttatattgggcctaactcatccttacaaa 182  Q
    |||||||||||||||||||||||||||||||||    
T  34250342 ttttttatattgggcctaactcatccttacaaa 34250374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 182
Target Start/End: Original strand, 40337868 - 40337898
Alignment:
Q  152 ttttatattgggcctaactcatccttacaaa 182  Q
    |||||||||||||||||||||||||||||||    
T  40337868 ttttatattgggcctaactcatccttacaaa 40337898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 16045291 - 16045319
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatg 102  Q
    |||||||||||||||||||||||||||||    
T  16045291 ggcccaatgggcctgaagcgtggacgatg 16045319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 16060804 - 16060832
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatg 102  Q
    |||||||||||||||||||||||||||||    
T  16060804 ggcccaatgggcctgaagcgtggacgatg 16060832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 19614189 - 19614126
Alignment:
Q  81 tgggcctgaagcgtggacgatgtgggaagcctagcaatatatctaggatacgctctaataccat 144  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||||||| ||||| |||||||    
T  19614189 tgggcctgaagcgtggacgatgtgggaagcccagcgatagatctaggataggctctgataccat 19614126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 19810861 - 19810996
Alignment:
Q  10 gcaattaggcggctaggggcggaccacaatga-ggcggaatttccaatacactccctcacacttgggcccaatgggcctgaagcgtggacgatgtgggaa 108  Q
    |||||||||| |||||||| |||||||||| | ||| |||||||||  | || ||||||  ||  ||||||||| ||||||||||||||||||| |||||    
T  19810861 gcaattaggcagctaggggtggaccacaattaaggcagaatttccaccataccccctcaggctcaggcccaatgagcctgaagcgtggacgatgcgggaa 19810960  T
Q  109 gcctagcaatatatctaggatacgctctaataccat 144  Q
    |||  |||| | ||||||||||  |||| |||||||    
T  19810961 gccctgcaacagatctaggatagtctctgataccat 19810996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 20735707 - 20735673
Alignment:
Q  74 ggcccaatgggcctgaagcgtggacgatgtgggaa 108  Q
    ||||||||||||||||||||||||||||| |||||    
T  20735707 ggcccaatgggcctgaagcgtggacgatgcgggaa 20735673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 34626931 - 34626969
Alignment:
Q  3 agatggtgcaattaggcggctaggggcggaccacaatga 41  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  34626931 agatgctgcaattaggtggctaggggcggaccacaatga 34626969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 41590391 - 41590483
Alignment:
Q  10 gcaattaggcggctaggggcggaccacaatg-aggcggaatttccaatacactccctcacacttgggcccaatgggcctgaagcgtggacgat 101  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||| ||| |||| || ||   || |||||||||  ||||||||  ||||||||    
T  41590391 gcaattaggcggctaggtgcggaccgcaatgaaggcggaattttcaacacaccccttcctgctcgggcccaattagcctgaagtatggacgat 41590483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University