View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19416_high_6 (Length: 338)
Name: NF19416_high_6
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19416_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 3 - 329
Target Start/End: Complemental strand, 42910679 - 42910353
Alignment:
| Q |
3 |
attagtagatattaagaattataagaacctttatatttaattgatgcatctgttgtactcgattcaatcgaagtttgctagatgtggaagaaacagaaag |
102 |
Q |
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| T |
42910679 |
attagtagatattaagaattataagaacctttatatttaattgatgcatctgttgtactcgattcaatcgaagtttgctagatgtggaagaaacagaaag |
42910580 |
T |
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| Q |
103 |
ctcgaatcctttattacattgtttgtcggggcacatgtcctccataacaggtcttttagctacaacttgcagttgcttttcaattttaatatcaagctct |
202 |
Q |
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| T |
42910579 |
ctcgaatcctttattacattgtttgtcggggcacatgtcctccataacaggtcttttagctacaacttgcagttgcttttcaattttaatatcaagctct |
42910480 |
T |
|
| Q |
203 |
cttgacggaacatgcaaggtgatcaatattagattatgtattaagaatcttgtaaaattttcatgtgcaatggtttaatgaagatgatacattaatttgt |
302 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910479 |
cttgatggaacatgcaaggtaatcaatattagattatgtattaagaatcttgtaaaattttcatgtgcaatggtttaatgaagatgatacattaatttgt |
42910380 |
T |
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| Q |
303 |
ttatcataataggtttgggatttcatc |
329 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42910379 |
ttatcataataggtttgggatttcatc |
42910353 |
T |
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