View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19416_low_1 (Length: 632)
Name: NF19416_low_1
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19416_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 3e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 422 - 615
Target Start/End: Original strand, 43769969 - 43770162
Alignment:
| Q |
422 |
tttatcctataactgtttgttgaaagatgtttagtcgaattgatttttatctgtgaaatgtcaatggcgttatgggaaaatagtttcttttgttcatgtt |
521 |
Q |
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| T |
43769969 |
tttaccctataactgtttgttgaaagatgtttagttgaattgatttttatctgtgaaatgtcaatggcgttatgggaaaatactttcttttgttcatgtt |
43770068 |
T |
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| Q |
522 |
tttatcgccaatgttttgtgtgaatgtttagtatgtatattggcttagttctgagttctgagaaaactgttgtggtgctcatagggtcatcgtg |
615 |
Q |
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| T |
43770069 |
tttatcgccaatgttttgtgtgattgtttagtatgtatattggcttagttctgagttctgagaaaactgttgtggtgctcttagggtcatcgtg |
43770162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 43769812 - 43769972
Alignment:
| Q |
61 |
atttatgcttcaatttgttgatttagatgggagacttgtcaatttgatgaccaataccataccctttatgttttcaatgttcatcaatannnnnnngagc |
160 |
Q |
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| T |
43769812 |
atttatgcttcaattagttgatttagattggagacttgtcaatttgatgtccaataccataccctttatgttttcaatgttcatcaatatttttttgagc |
43769911 |
T |
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| Q |
161 |
aatctacttgttatcaaatggtgattcaacatgagtcaagtaggtaaaaactaacatttta |
221 |
Q |
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| T |
43769912 |
aatctacttgttatcaaatggtgattcaacatgagtcaagtaggtaaaaaccaacatttta |
43769972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 43769735 - 43769793
Alignment:
| Q |
10 |
ataatactcataaggtactttgttttattttccttataaccattctattatatttatgc |
68 |
Q |
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| T |
43769735 |
ataatactcctaaggtactttgttttattttccttataaccattctattatatttatgc |
43769793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 430 - 612
Target Start/End: Original strand, 42356174 - 42356357
Alignment:
| Q |
430 |
ataactgtttgttgaaagatgtttagtcgaattgatttttatctgtgaaatgtcaatggcgttatgggaaaatagtttcttttgttcatgtttttatcgc |
529 |
Q |
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| T |
42356174 |
ataactggttgttgtgagatgtttattcgaatagatatttatgtgtgaaatgtcaatggtatcatgggaaaatagcttctattgttcatgattttatcac |
42356273 |
T |
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| Q |
530 |
caatgttttgtgtgaatgtttagtatgtata-ttggcttagttctgagttctgagaaaactgttgtggtgctcatagggtcatc |
612 |
Q |
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| T |
42356274 |
caatgttttgtttgactgtttcgtatgtatagtttgtttagttctgagttctgagaaaacagttgtggtgttctcagggtcatc |
42356357 |
T |
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