View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19416_low_2 (Length: 563)
Name: NF19416_low_2
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19416_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 46872132 - 46872365
Alignment:
| Q |
13 |
aatattaaggttgtgtttgttaaaaattattaaaaatagttgataaactaacttataacgaataaatttataaaagatgggtgataagttaactcatagc |
112 |
Q |
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| T |
46872132 |
aatattaaggttgtgtttgttaaaaattattaaaaatagttgataaactaacttataacgaataaatttataaaagatgggtgataagttaactcatagc |
46872231 |
T |
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| Q |
113 |
taacataacagcgagataaaccagctgattaaatttgtagtgtataacaagttaaccattgaactaacttatggaatataaaggagttctaatatttgta |
212 |
Q |
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| T |
46872232 |
taacataacagcgagataaaccagctgattaaatttgtagtgtataacaagttaaccgttgaactaacttatggaatataaaggagttctaatatttgta |
46872331 |
T |
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| Q |
213 |
gtgtttagtatatttgggatgcagggctatatat |
246 |
Q |
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| T |
46872332 |
gtgtttagtatatttgggatgcagggctctatat |
46872365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 240 - 548
Target Start/End: Original strand, 46872501 - 46872795
Alignment:
| Q |
240 |
tatatatgtcaaagcactctaaaacctaaatatcccgataaagtaacaaggctatgtatgtcattgcacctactaaataactgattccgcaaacagatgc |
339 |
Q |
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| T |
46872501 |
tatatatgtcaaagcactctaaaacctaaatatcccgataaagtaacaaggctatgtatgtcattgcacctgctaaataactgattccgcaaacagatgc |
46872600 |
T |
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| Q |
340 |
gaccgttggcttttgaaaaaatttcaaatttcgaacttattttactcaccaaatacaacaaacttctaaacattacaacaataacaaaactcaaagnnnn |
439 |
Q |
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| T |
46872601 |
gaccgttggcttttgaaaa--tttcaaatttcgaacttattttactcaccaaat--------------------acaacaataacaaaactcaaagaaaa |
46872678 |
T |
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| Q |
440 |
nnnnn--tcgctgaagaatcgagaattcaaccatgagattccaccttcaatcaaaatctaacagcattg------aagaagaagaagaaaacaaccatga |
531 |
Q |
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| T |
46872679 |
aaaaaaatcgctgaagaatcgagaattcaaccatgagattccaccttcaatcaaaatctaacagcattgaagaacaagaagaagaagaaaacaaccatga |
46872778 |
T |
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