View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19416_low_3 (Length: 548)
Name: NF19416_low_3
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19416_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 47286119 - 47286484
Alignment:
| Q |
10 |
attatactccatacagtttgtgtacatactacataacacataacagagaagaaaataacaaaactaaattgctccatgtagaattcttgaatacttgtac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286119 |
attatactccatacagtttgtgtacatactacataaca-------gagaagaaaataacaaaactaaattgctccatgtagaattcttgaatacttgtac |
47286211 |
T |
|
| Q |
110 |
cnnnnnnnnnnnnnnnntcttgaatacccacaagaaaacgtgggtgacgatatttcttaggcaaagtcagtctaaatattaaattcattttcttacatca |
209 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286212 |
caaaaaaaagaaaaaaatcttgaatacccacaagaaaaggtgggtgacgatatttcttaggcaaagtcagtctaaatattaaattcattttcttacatca |
47286311 |
T |
|
| Q |
210 |
acatacttctttcattttcattaggataatatttgtaacataagttagacttaaatctaaaacataggatttgccagctttgatggtctccaccaagggt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47286312 |
acatacttctttcattttcattaggataatatttgtaacataagttagacttaaatctaaaacataggatttgccagctttgatggtctccactaagggt |
47286411 |
T |
|
| Q |
310 |
atatgtttgtcgtcaaataaaagtattaatcatatagttttaacaaaattactttgtggttctataaatttga |
382 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286412 |
atatgtttgtcttcaaataaaagtattaatcatatagttttaacaaaattactttgtggttctataaatttga |
47286484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 426 - 532
Target Start/End: Original strand, 47286524 - 47286630
Alignment:
| Q |
426 |
gtattgattattttttggactggtccaacgcccagacacacatacagattcaattatactggattatctttagtcttgaatcctcacctaccattttata |
525 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286524 |
gtattgattattttctggattggtccaacgcccagacacacatacaggttcaattatactagattatctttagtcttgaatcctcacctaccattttata |
47286623 |
T |
|
| Q |
526 |
acacttc |
532 |
Q |
| |
|
||||||| |
|
|
| T |
47286624 |
acacttc |
47286630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University