View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19416_low_6 (Length: 466)
Name: NF19416_low_6
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19416_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 34 - 450
Target Start/End: Original strand, 32027349 - 32027773
Alignment:
| Q |
34 |
agcaacaatgcagcatctcggttaaaaatgacaaatgtagcagagtttgtctcgtcaataacatgaaccttaatcatgtagtacaataaaaatttaacaa |
133 |
Q |
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| T |
32027349 |
agcaacaatgcagcatctcggttaaaaatgccaaatgtagcagagtctgtctcgttaataacatgaaccttaatcgtgtagtacaataaaaatttaacaa |
32027448 |
T |
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| Q |
134 |
ttattcctatattaatgggaaatcatattttcacaacctacctatataatcatagataatgataatag--gnnnnnnnntcctattacgaacataggaga |
231 |
Q |
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| T |
32027449 |
ttatttctatattaatgggaaatcatattttcacaacctacctatataatcatagataatgataatagaaaaaaaaaaatcctattacgaacataggaga |
32027548 |
T |
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| Q |
232 |
aacatgcacaacatgcttattgcatttg-----gaagtacatacgctcatcttgcactatc-tttttgtcgcaaacacatgcattttaccgtcaatcatc |
325 |
Q |
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| T |
32027549 |
aacatgcacaacatgcttattgcatttggaacagaagtacatacgctcatcttgcactatcttttttgtcgcaaacacatgcattttatcgtcaatcatc |
32027648 |
T |
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| Q |
326 |
tgtatctatatcatatatgactagtcatcacaagaaagcaaagcatgattcctacaaaagtnnnnnnnntaacaactaatcacttgagatattaattcaa |
425 |
Q |
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| T |
32027649 |
tgtatctataacatatatgactgctcattacaagaaagcaaagcatgattcctacaaaagtaaaaaaaataacaactaatcacttgagatattaattcaa |
32027748 |
T |
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| Q |
426 |
aaaatacattaagaaacaaaaacgt |
450 |
Q |
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| T |
32027749 |
aaaatacattaagaaacaaaaacgt |
32027773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 32026741 - 32026620
Alignment:
| Q |
88 |
tcaataacatgaaccttaatcatgta-------gtacaataaaaatttaacaattattcctatattaatgggaaatcatattttcacaacctacctatat |
180 |
Q |
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||||||||| |||||||||||||||| ||||| |||||| |||||||||||| || |||||||||||| | ||||||| || |||||||||||| |
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| T |
32026741 |
tcaataacacgaaccttaatcatgtaactatatgtacattaaaaaattaacaattattactttattaatgggaagtaatattttaacgacctacctatat |
32026642 |
T |
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| Q |
181 |
aatcatagataatgataatagg |
202 |
Q |
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|||||| | ||| ||||||||| |
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| T |
32026641 |
aatcatggctaaagataatagg |
32026620 |
T |
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