View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19416_low_7 (Length: 445)
Name: NF19416_low_7
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19416_low_7 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Complemental strand, 41081347 - 41080918
Alignment:
| Q |
12 |
atgaatcagaaaatacaaacaccaatgcagttccaaaaccaaatcttctacgcgtcaaagaaaattctcattcttgcacattgaggttccatgaatcttg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41081347 |
atgaatcagaaaatacaaacaccaatgcagttccaaaaccaaatcttttacgcgtcaaagaaaattctcattcttgcacattgaggttccatgaatcttg |
41081248 |
T |
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| Q |
112 |
cagctccaatcacttatttctaccaatcctgagcaagacaatatgacataactaaggtctcaattgcctaagccaccatagataatgaaagaccaatcta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41081247 |
cagctccaatcacttatttctaccaatcctgagcaagacaatatgacataacaaaggtctcaattgcctaagccaccatagataatgaaagaccaatcta |
41081148 |
T |
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| Q |
212 |
aagttagttttaacattaggcatgagtagaaccatattaattggtaagggatatgctatgattttgattggttaaaatgccatttcctgtcaagaaacga |
311 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41081147 |
aagttagttttaacattaggcatgagtagaaccat----attggtaagggatatgctatgattttgattggttaaaatgccatttcctgtcaagaaacga |
41081052 |
T |
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| Q |
312 |
cataacacccctacttatcatactccaccataatataaaatagaagcagctgtcttatatatgcagattatacaaaataaattacctaaaatattaaccg |
411 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41081051 |
cataacccccctacttatcatactccaccataatataaaatagaagcagctgtcttatatatgcagattatacaaaataaattacctaaaatattaaccg |
41080952 |
T |
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| Q |
412 |
cagatgcctcaaaatatgcagattacacacaact |
445 |
Q |
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| T |
41080951 |
cagatgcctcaaaatatgcagattacacacaact |
41080918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 118 - 442
Target Start/End: Complemental strand, 41089251 - 41088931
Alignment:
| Q |
118 |
caatcacttatttctaccaatcctgagcaagacaatatgacataactaaggtctcaattgcctaagccaccatagataatgaaagaccaatctaaagtta |
217 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
41089251 |
caatcacatatttctaccaatcctaagcaagacaatatgacataactaaagtctcaattgcctaagccaccatagataacgaaagaccaatctaaaggta |
41089152 |
T |
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| Q |
218 |
gttttaacattaggcatgagtagaaccatattaattggtaagggatatgctatgattttgattggttaaaatgccatttcctgtcaagaaacgacataac |
317 |
Q |
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|||||||||||| |||||| |||||||||| | ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||| | |
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| T |
41089151 |
gttttaacattatgcatgactagaaccataat----ggtaagggataagctatgatttagattcgttaaaatgccatttcctgtcaagaaaccacatcag |
41089056 |
T |
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| Q |
318 |
acccctacttatcatactccaccataatataaaatagaagcagctgtcttatatatgcagattatacaaaataaattacctaaaatattaaccgcagatg |
417 |
Q |
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||||| ||||||| |||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||| | || || |
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| T |
41089055 |
accccggcttatcaaactccaccatgatataaaatagaagcagctgcctcatatatgtagattatacaaaataaattacctagaatattaacagtagctg |
41088956 |
T |
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| Q |
418 |
cctcaaaatatgcagattacacaca |
442 |
Q |
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| T |
41088955 |
cctcaaaatatgcagattacacaca |
41088931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 115 - 353
Target Start/End: Complemental strand, 41103642 - 41103396
Alignment:
| Q |
115 |
ctccaatcacttatttctaccaatcctgagcaagacaatatgacataactaaggtctcaattgcct-------------aagccaccatagataatgaaa |
201 |
Q |
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||||||||||||||||| ||||||||| ||||||||| ||| || | ||||||||||||||||||| |||||||||||||||| |||| |
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| T |
41103642 |
ctccaatcacttatttcgaccaatcctaagcaagacagtataactttactaaggtctcaattgccttattatacacagcaagccaccatagataacgaaa |
41103543 |
T |
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| Q |
202 |
gaccaatctaaagttagttttaacattaggcatgagtagaaccatattaattggtaagggatatgctatgattttgattggttaaaatgccatttcctgt |
301 |
Q |
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| T |
41103542 |
ggccaatttaaaggtagtttcaacattatgcatgagtagaatcat----attggtaacggataagctatgattttaattggttaaaatggcattt-ctgt |
41103448 |
T |
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| Q |
302 |
caagaaacgacataacacccctacttatcatactccaccataatataaaata |
353 |
Q |
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|||||||| |||| | |||| ||||||| |||||||||| |||||||||| |
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| T |
41103447 |
caagaaaccacatcagaccctggcttatcaaactccaccatgatataaaata |
41103396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 41089359 - 41089292
Alignment:
| Q |
42 |
ttccaaaaccaaatcttctacgcgtcaa-agaaaattctcattcttgcacattgaggttccatgaatc |
108 |
Q |
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||||||||||||||||||||||| |||| | |||||||||||||||||| ||| |||| |||||||| |
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| T |
41089359 |
ttccaaaaccaaatcttctacgcctcaacaaaaaattctcattcttgcatattaaggtcacatgaatc |
41089292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 41103707 - 41103664
Alignment:
| Q |
78 |
ctcattcttgcacattgaggttccatgaatcttgcagctccaat |
121 |
Q |
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| T |
41103707 |
ctcattgttgcacattgaggtcccatgaatcttgcagctccaat |
41103664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 4132197 - 4132286
Alignment:
| Q |
32 |
accaatgcagttccaaaaccaaatcttctacgcgtcaaagaaaattctcattcttgcacattgaggttccatgaatcttgcagctccaat |
121 |
Q |
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|||||| |||||||||||||||||||||||||| |||| |||| ||||||| |||| |||||||| ||||||||| || ||||||||| |
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| T |
4132197 |
accaatacagttccaaaaccaaatcttctacgcctcaacaaaaagtctcattgctgcatattgaggtcccatgaatcatgtagctccaat |
4132286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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