View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19416_low_9 (Length: 329)
Name: NF19416_low_9
Description: NF19416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19416_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 27958640 - 27958929
Alignment:
| Q |
18 |
caaatcacatcttgaattcaaatacaactaggagactccttattcacaaacaataattatcttnnnnnnnnnnnnnnnnncaaactagcaaaagacatat |
117 |
Q |
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| T |
27958640 |
caaatcacatcttgaattcaaatacaactaggagactccttattaacaaacaataattatcttaaaataaaataaaaaa-caaactagcaaaagacatat |
27958738 |
T |
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| Q |
118 |
tggaggaccggccaaacttattaaaggacacattcgaggtctaaactcattaaagaaagttgcatttggaatgttactgtagttttgataaatttaatta |
217 |
Q |
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| T |
27958739 |
tggaggaccggccaaactcattaaaagacacattcgaggtctaaactcattaaagaaagttgcatttagaatgttactgtaattttgataaatttaatta |
27958838 |
T |
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| Q |
218 |
ctatagtaacagtgttagacacattcaaagatcaaaatgactcnnnnnnnntatttactcgtggctgctaagacaccttccattcaacacaag |
310 |
Q |
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| T |
27958839 |
ctatagtaacagtgttagatacattcaaagatcaaaatgactc--taaaaatatatactcgtggctgctaaggcaccttccattcaacacaag |
27958929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 27955677 - 27955714
Alignment:
| Q |
273 |
tactcgtggctgctaagacaccttccattcaacacaag |
310 |
Q |
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| T |
27955677 |
tactggtggctgttaagacaccttccattcaacacaag |
27955714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 16330922 - 16330837
Alignment:
| Q |
98 |
caaactagcaaaagacatattggaggaccggccaaacttattaaaggacacattcgaggtctaaactcattaaagaaagttgcatt |
183 |
Q |
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| T |
16330922 |
caaactaactaaagacatattggaggaccggccaaacttattaaaggacacattcgcggtctaaactcattaaagaaagttgcatt |
16330837 |
T |
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