View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19417_high_1 (Length: 520)
Name: NF19417_high_1
Description: NF19417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19417_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 504
Target Start/End: Original strand, 44456613 - 44457101
Alignment:
| Q |
16 |
cacaatccaattaatttactctgtgagtgtatcaagaattgaagccaataaaggattaactaattaacagctaataactacctttataactatagcttaa |
115 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44456613 |
cacaatccaattgatttactctgtgagtgtatcaagaattgaagccgataaaggattaactaattaacagctaataactacctttataactatagcttaa |
44456712 |
T |
|
| Q |
116 |
atcaaacaaccttgaaatatagggtaaaatgcaaacccatcccctcttccccttttcaactttggttcacttactctttgcccttctatagtgcacactc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
44456713 |
atcaaacaaccttgaaatatagggtaaaatgcaaacccatcccctcttccccttttcaactttggttcacttactatttgcccctctatagtgcacactc |
44456812 |
T |
|
| Q |
216 |
attggacattttgactaatggacaaatgcaataaacctcttaaacttagagtgattgaattatgtaagatgtacctcaactttgaaagggacnnnnnnnn |
315 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44456813 |
attggacattttgactaatggacaaatgtaataaacctcttaaacttagagtgattgaattatgtaagatgtacctcaactttgaaagggacaaaaaaaa |
44456912 |
T |
|
| Q |
316 |
tccattctttgttctccgaatgcaagnnnnnnnccatgtccaacaagtattaagttgactagtgaatatgaccatgccggtgtcaattattactaacagt |
415 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
44456913 |
tccattctttgttctccgaatgcaagaaaaaaacaatgtccaacaagtattaagttgactcgtgaaaatgaccatgccggtgtcaattattactaacagt |
44457012 |
T |
|
| Q |
416 |
caagcttggtatacctttctcttgtgtgtgcgcttaaaatacagttttcatgcaattaattgctcaggcatctacgttaaagtgatcta |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44457013 |
caagcttggtatacctttctcttgtgtgtgcgcttaaaatacagttttcatgcaattaattgctcaggcatctacgttaaagtgatcta |
44457101 |
T |
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