View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19417_low_1 (Length: 660)

Name: NF19417_low_1
Description: NF19417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19417_low_1
NF19417_low_1
[»] chr7 (5 HSPs)
chr7 (295-653)||(9416299-9416665)
chr7 (14-149)||(9417209-9417344)
chr7 (44-149)||(38735919-38736024)
chr7 (214-263)||(9417095-9417144)
chr7 (42-114)||(29407672-29407744)
[»] chr1 (6 HSPs)
chr1 (45-149)||(42106964-42107068)
chr1 (45-149)||(8245448-8245552)
chr1 (48-104)||(23391867-23391923)
chr1 (43-119)||(8245355-8245431)
chr1 (62-136)||(1035366-1035439)
chr1 (108-149)||(28867155-28867196)
[»] chr5 (9 HSPs)
chr5 (47-149)||(2846395-2846497)
chr5 (47-149)||(2858216-2858318)
chr5 (40-146)||(4381654-4381760)
chr5 (48-149)||(41982536-41982637)
chr5 (99-149)||(4650347-4650397)
chr5 (45-119)||(38734607-38734681)
chr5 (63-119)||(4381777-4381833)
chr5 (97-149)||(38734698-38734750)
chr5 (45-86)||(2858119-2858160)
[»] chr3 (8 HSPs)
chr3 (505-609)||(1460719-1460819)
chr3 (45-149)||(19594485-19594588)
chr3 (45-148)||(50293587-50293690)
chr3 (64-149)||(46690591-46690676)
chr3 (48-149)||(19582270-19582371)
chr3 (72-149)||(25750829-25750907)
chr3 (45-119)||(54449762-54449836)
chr3 (43-146)||(54449856-54449963)
[»] chr2 (2 HSPs)
chr2 (45-149)||(6407870-6407974)
chr2 (107-146)||(39324794-39324833)
[»] chr8 (3 HSPs)
chr8 (46-143)||(6924211-6924308)
chr8 (45-146)||(39141821-39141922)
chr8 (64-149)||(3771644-3771729)
[»] chr6 (2 HSPs)
chr6 (43-149)||(23126764-23126869)
chr6 (46-146)||(4980521-4980621)
[»] scaffold1786 (1 HSPs)
scaffold1786 (48-104)||(1261-1317)
[»] scaffold1609 (1 HSPs)
scaffold1609 (48-104)||(9-65)
[»] scaffold0118 (1 HSPs)
scaffold0118 (307-364)||(9554-9611)
[»] chr4 (1 HSPs)
chr4 (95-146)||(27764034-27764085)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 295 - 653
Target Start/End: Complemental strand, 9416665 - 9416299
Alignment:
Q  295 acatcatacatataaccatttttggcaagaatgaaaagtgatataggtgctgaatcaaaacttataataattgcaaccaagtgcatttcactgatagtcg 394  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9416665 acatcatacatataaccatttttggcaagaatgaaaagtaatataggtgctgaatcaaaacttataataattgcaaccaagtgcatttcactgatagtcg 9416566  T
Q  395 ttgaattcataggtatcaattttgattcacacaccatttatccttccttcccttacacaatttcaatgtcaccttgctacaaatcaaatgggttgactat 494  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9416565 ttgaatttataggtatcaattttgattcacacaccatttatccttccttcccttacacaatttcaacgtcaccttgctacaaatcaaatgggttgactat 9416466  T
Q  495 taatatctccttaatactgcattttgtttttgtcctccacattatataaccaccactttaatttcctactaattccactttatttcctttag---tgtgt 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  9416465 taatatctccttaatactgcattttgtttttgtcctccacattatataaccaccactttaatttcctactaattccactttatttcctttagtcatgtgt 9416366  T
Q  592 catacgtttttacttctcat--tagtgtt---ataaaacccctggcctaagccaacaagtataatct 653  Q
    ||||||||||||||||||||  |||||||   ||||||||||||||||| |||||||||||| ||||    
T  9416365 catacgtttttacttctcattatagtgttataataaaacccctggcctacgccaacaagtatgatct 9416299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 9417344 - 9417209
Alignment:
Q  14 aaacactgcttaaattgccactgcacattaggagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaat 113  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||  ||||| |||||||| ||||||||    
T  9417344 aaacactgcttaaattgccactgcatattaggagaaactcttctataaacacaaccacaaatgataaatatttgggcacagttacatcaaatggaaaaat 9417245  T
Q  114 ttaaagcaaaaataattagatcatatcaatcaacat 149  Q
    |||||| ||||||||||||||||||| |||||||||    
T  9417244 ttaaagtaaaaataattagatcatattaatcaacat 9417209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 38736024 - 38735919
Alignment:
Q  44 ggagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaat 143  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||  ||| |||||||||| | |||||||||||||||||||||||| |||| ||||||    
T  38736024 ggagaaactcttctatgaacacaaccacaaatgataaatacttgggcacaatcacatcaaatgaaaaaatttaaagcaaaaataattaaatcacatcaat 38735925  T
Q  144 caacat 149  Q
    ||||||    
T  38735924 caacat 38735919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 9417144 - 9417095
Alignment:
Q  214 gtggttgtgttgatgaaaaaggttcttttgataaactaatcatccttacg 263  Q
    ||||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  9417144 gtggttgtgatgatgaaaaaggttcttttgataagctaattatccttacg 9417095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 29407672 - 29407744
Alignment:
Q  42 taggagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatt 114  Q
    |||||||||||||| |||  | |||||||||||||||||||||||| | ||| ||||||||||  ||||||||    
T  29407672 taggagaaactcttctatagatacaaccacaaatgataaatatttgaacacattcacatcaaatagaaaaatt 29407744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 42106964 - 42107068
Alignment:
Q  45 gagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatc 144  Q
    ||||||||||| |||| || ||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||| |||| ||||||     
T  42106964 gagaaactcttctatggactcaaccacaaatgataaatatttggacacactcacatcaaatggaaaaatttaaaacaaaaataattaaatcacatcaatt 42107063  T
Q  145 aacat 149  Q
    |||||    
T  42107064 aacat 42107068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 8245552 - 8245448
Alignment:
Q  45 gagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatc 144  Q
    ||||||||||| |||| ||||||| | ||||||||||||||| || ||| |||||||||| |||||||||| || |||||||||||| |||| |||||||    
T  8245552 gagaaactcttctatggacacaactataaatgataaatatttagaaacactcacatcaaatggaaaaattttaaacaaaaataattaaatcacatcaatc 8245453  T
Q  145 aacat 149  Q
    |||||    
T  8245452 aacat 8245448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 23391867 - 23391923
Alignment:
Q  48 aaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaa 104  Q
    ||||||||||||| |||||||||||||||||||||||||||  ||| ||||||||||    
T  23391867 aaactcttatatggacacaaccacaaatgataaatatttggggacactcacatcaaa 23391923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 8245355 - 8245431
Alignment:
Q  43 aggagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaag 119  Q
    ||||||||||||| ||| |||||||  ||||||||||||||||| |  ||| |||||||||| | ||||||| ||||    
T  8245355 aggagaaactcttctataaacacaattacaaatgataaatatttaggcacactcacatcaaatgcaaaaattaaaag 8245431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 1035366 - 1035439
Alignment:
Q  62 acacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatca 136  Q
    |||||| |||||||||||||||||||  |||| |||||| |||   ||||| ||||| |||||||||||||||||    
T  1035366 acacaatcacaaatgataaatatttgagtacactcacattaaa-taaaaaaattaaaacaaaaataattagatca 1035439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 28867155 - 28867196
Alignment:
Q  108 aaaaatttaaagcaaaaataattagatcatatcaatcaacat 149  Q
    |||||||||||  ||||||||||| |||||||||||||||||    
T  28867155 aaaaatttaaaataaaaataattaaatcatatcaatcaacat 28867196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 2846497 - 2846395
Alignment:
Q  47 gaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatcaa 146  Q
    ||||||||| ||||||||||| |||||||||||||||||||||  || |||||||||| |||||| |||||| |||||||||||||||||  ||||||||    
T  2846497 gaaactcttctatgaacacaagcacaaatgataaatatttggacgcactcacatcaaatggaaaattttaaaacaaaaataattagatcacctcaatcaa 2846398  T
Q  147 cat 149  Q
    |||    
T  2846397 cat 2846395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 2858318 - 2858216
Alignment:
Q  47 gaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatcaa 146  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||  |  |||||||||| ||||||||||||| ||||||||| ||||||| |||||||||    
T  2858318 gaaactcttctatgaacacaagcacaaatgaaaaatatttggacgcgctcacatcaaatggaaaaatttaaaacaaaaataaatagatcacatcaatcaa 2858219  T
Q  147 cat 149  Q
    |||    
T  2858218 cat 2858216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 4381654 - 4381760
Alignment:
Q  40 attaggagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatat 139  Q
    |||||||||||| ||| ||| |||| |||||||||||||||||||||||  ||| | | ||||||  |||||||||||| ||||| ||||||||||| ||    
T  4381654 attaggagaaacacttttataaacataaccacaaatgataaatatttgggcacactaatatcaaatagaaaaatttaaaacaaaattaattagatcacat 4381753  T
Q  140 caatcaa 146  Q
    |||||||    
T  4381754 caatcaa 4381760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 41982637 - 41982536
Alignment:
Q  48 aaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatcaac 147  Q
    |||||||| |||  ||||||  |||||||||||||||||||  ||| |||||||||| | ||||||||||| ||||||||||||||||  ||||||||||    
T  41982637 aaactcttctatagacacaaatacaaatgataaatatttgggcacactcacatcaaatgaaaaaatttaaaacaaaaataattagatcccatcaatcaac 41982538  T
Q  148 at 149  Q
    ||    
T  41982537 at 41982536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 4650397 - 4650347
Alignment:
Q  99 atcaaacggaaaaatttaaagcaaaaataattagatcatatcaatcaacat 149  Q
    |||||| | ||||||||||| ||||||||||||||||| ||||||||||||    
T  4650397 atcaaatgaaaaaatttaaaacaaaaataattagatcacatcaatcaacat 4650347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 38734607 - 38734681
Alignment:
Q  45 gagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaag 119  Q
    ||||||||||| ||| |||||||| | ||||||||||||||| || ||| |||||||||| | ||||||| ||||    
T  38734607 gagaaactcttctataaacacaactataaatgataaatatttagacacactcacatcaaatgcaaaaattaaaag 38734681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 4381833 - 4381777
Alignment:
Q  63 cacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaag 119  Q
    |||||| ||||||||||||||||| |||||| |||||||||| | ||||||| ||||    
T  4381833 cacaactacaaatgataaatatttagatacactcacatcaaatgcaaaaattaaaag 4381777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 38734750 - 38734698
Alignment:
Q  97 acatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatcaacat 149  Q
    ||||||||  ||||| |||||| ||||||||||||||||| ||||||||||||    
T  38734750 acatcaaatagaaaagtttaaaacaaaaataattagatcacatcaatcaacat 38734698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 2858119 - 2858160
Alignment:
Q  45 gagaaactcttatatgaacacaaccacaaatgataaatattt 86  Q
    ||||||||||| |||  |||||||||||||||||||||||||    
T  2858119 gagaaactcttctatagacacaaccacaaatgataaatattt 2858160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 505 - 609
Target Start/End: Original strand, 1460719 - 1460819
Alignment:
Q  505 ttaatactgcattttgtttttgtcctccacattatataaccaccactttaatttcctactaattccactttatttcctttagtgtgtcatacgtttttac 604  Q
    |||| ||||||||| ||||||||||||||||    |||| ||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  1460719 ttaaaactgcatttcgtttttgtcctccaca----ataatcaccagtttaatttcctactaattccactttatttcctttagtgtgtaatgcggttttac 1460814  T
Q  605 ttctc 609  Q
    |||||    
T  1460815 ttctc 1460819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 19594485 - 19594588
Alignment:
Q  45 gagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatc 144  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| ||| ||| ||  |||||| ||||| |||||||||||| |||| ||  |||    
T  19594485 gagaaactcttatatgaacacaatcacaaatgataaatatttagatacactcatatc-aattgaaaaaattaaatcaaaaataattaaatcacatatatc 19594583  T
Q  145 aacat 149  Q
    |||||    
T  19594584 aacat 19594588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 50293587 - 50293690
Alignment:
Q  45 gagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatc 144  Q
    |||||||||||  || ||||||| ||||||||||||||||| || |||| ||| ||||||  ||||||||| || |||||||||||| |||| |||||||    
T  50293587 gagaaactcttccataaacacaagcacaaatgataaatattcgggtacactcatatcaaatagaaaaattttaaacaaaaataattaaatcacatcaatc 50293686  T
Q  145 aaca 148  Q
    ||||    
T  50293687 aaca 50293690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 46690591 - 46690676
Alignment:
Q  64 acaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatcaacat 149  Q
    |||||| ||||||||||||||||    ||| ||| |||||| | ||||||||||| ||||||||||||||| ||||||||||||||    
T  46690591 acaaccgcaaatgataaatatttaagcacattcatatcaaatgaaaaaatttaaaacaaaaataattagatgatatcaatcaacat 46690676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 19582270 - 19582371
Alignment:
Q  48 aaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatcaac 147  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||| | | || |   | ||||| |||||  ||||||||||| |||| ||||||||||    
T  19582270 aaactcttatatggacaaaatcacaaatgataaatatttggatacatttatataatttgaaaaaaattaaattaaaaataattaaatcacatcaatcaac 19582369  T
Q  148 at 149  Q
    ||    
T  19582370 at 19582371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 25750829 - 25750907
Alignment:
Q  72 aaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagc-aaaaataattagatcatatcaatcaacat 149  Q
    ||||||||||||||| || ||| ||||||||||  |||||||||||| | ||||||||||| || | ||||||||||||    
T  25750829 aaatgataaatatttagacacactcacatcaaatagaaaaatttaaaacaaaaaataattaaattacatcaatcaacat 25750907  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 54449762 - 54449836
Alignment:
Q  45 gagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaag 119  Q
    ||||||||||| |||  ||||||||| ||||||||||||||| || ||| |||||| ||| | ||||||| ||||    
T  54449762 gagaaactcttctatagacacaaccataaatgataaatatttagacacattcacattaaatgcaaaaattaaaag 54449836  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 54449963 - 54449856
Alignment:
Q  43 aggagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagca----aaaataattagatcata 138  Q
    |||| |||||||| |||| |||||| |  |||||||||||||||||  ||| | |||| |||  |||||||||||| ||    ||||||||||||||| |    
T  54449963 aggataaactcttctatggacacaatcgtaaatgataaatatttgggcacattgacattaaatagaaaaatttaaaacaaattaaaataattagatcaca 54449864  T
Q  139 tcaatcaa 146  Q
    ||||||||    
T  54449863 tcaatcaa 54449856  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 6407870 - 6407974
Alignment:
Q  45 gagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatc 144  Q
    ||||||||||| |||| ||||||| | ||||||||||||||| || ||| |||||||||| |||||||||| || |||||||||||| |||| |||||||    
T  6407870 gagaaactcttctatggacacaactataaatgataaatatttagaaacattcacatcaaatggaaaaattttaaacaaaaataattaaatcacatcaatc 6407969  T
Q  145 aacat 149  Q
    |||||    
T  6407970 aacat 6407974  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 39324794 - 39324833
Alignment:
Q  107 gaaaaatttaaagcaaaaataattagatcatatcaatcaa 146  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  39324794 gaaaaatttaaaacaaaaataattagatcacatcaatcaa 39324833  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 6924308 - 6924211
Alignment:
Q  46 agaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaat 143  Q
    |||||||||||||| || |||||||||||  ||||||||||||  ||| ||||||||||  |||||| ||||| ||||||||||||||||||||||||    
T  6924308 agaaactcttatataaatacaaccacaaagtataaatatttgggcacactcacatcaaatagaaaaaattaaaacaaaaataattagatcatatcaat 6924211  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 39141821 - 39141922
Alignment:
Q  45 gagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatc 144  Q
    ||||||||||||  |||||||||  | |||||||||||||||||| ||| | | |||||| | ||||||||||| |||||||||||| ||||||||||||    
T  39141821 gagaaactcttacgtgaacacaaatataaatgataaatatttggacacatttatatcaaatgaaaaaatttaaaacaaaaataattaaatcatatcaatc 39141920  T
Q  145 aa 146  Q
    ||    
T  39141921 aa 39141922  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 3771729 - 3771644
Alignment:
Q  64 acaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatcaacat 149  Q
    |||||| ||||||| ||||||||||  ||| |||||| ||| | ||||| ||||| ||||||||||   |||| ||||||||||||    
T  3771729 acaaccccaaatgaaaaatatttgggcacattcacattaaatgaaaaaaattaaaacaaaaataatataatcacatcaatcaacat 3771644  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 23126764 - 23126869
Alignment:
Q  43 aggagaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaa 142  Q
    ||||||||||||| |||  |||||| |||||||||||||||||| |  ||| |||||| ||| ||||||| || || |||||||||||| |||| |||||    
T  23126764 aggagaaactcttctatagacacaatcacaaatgataaatatttaggcacactcacataaaatggaaaaaatt-aatcaaaaataattaaatcacatcaa 23126862  T
Q  143 tcaacat 149  Q
    |||||||    
T  23126863 tcaacat 23126869  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 4980621 - 4980521
Alignment:
Q  46 agaaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatca 145  Q
    |||||||||||| | ||||||| || |||||||||||||||| | ||| | ||||||||  |||||| |||||  |||||||| || | || ||||||||    
T  4980621 agaaactcttatgtaaacacaatcaaaaatgataaatatttgaacacatttacatcaaatagaaaaaattaaaataaaaataaataaaccacatcaatca 4980522  T
Q  146 a 146  Q
    |    
T  4980521 a 4980521  T

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Target: scaffold1786 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 1317 - 1261
Alignment:
Q  48 aaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaa 104  Q
    ||||||||||||| |||||||||||||||||||||||||||  ||| ||||||||||    
T  1317 aaactcttatatggacacaaccacaaatgataaatatttggggacactcacatcaaa 1261  T

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Target: scaffold1609 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 65 - 9
Alignment:
Q  48 aaactcttatatgaacacaaccacaaatgataaatatttggatacagtcacatcaaa 104  Q
    ||||||||||||| |||||||||||||||||||||||||||  ||| ||||||||||    
T  65 aaactcttatatggacacaaccacaaatgataaatatttggggacactcacatcaaa 9  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 9554 - 9611
Alignment:
Q  307 taaccatttttggcaagaatgaaaagtgatataggtgctgaatcaaaacttataataa 364  Q
    ||||||||||||||||||| |||||||   ||||||| || |||||||||||||||||    
T  9554 taaccatttttggcaagaaggaaaagtagcataggtgatggatcaaaacttataataa 9611  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 27764034 - 27764085
Alignment:
Q  95 tcacatcaaacggaaaaatttaaagcaaaaataattagatcatatcaatcaa 146  Q
    |||||||||| | ||||||||||| |||||||||||| |||| |||||||||    
T  27764034 tcacatcaaatgcaaaaatttaaaacaaaaataattaaatcacatcaatcaa 27764085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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