View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19417_low_3 (Length: 236)
Name: NF19417_low_3
Description: NF19417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19417_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7289836 - 7289615
Alignment:
| Q |
1 |
tttagctatgcaaagatggataaaaatttgcaacatccaataatttttaattattatatttatctacacaatggactttgaggatgatgagaacaagcga |
100 |
Q |
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| T |
7289836 |
tttagctatgcaaagatggataaaaatttgcaacatccaataatttttaattattatatttatctacacaatggactttgaggatgatgagaacaaacga |
7289737 |
T |
|
| Q |
101 |
gttaattttctaaagaacaataactcatcatttcttcaatgccaattgatctacattcttgtttgaacaatatccttattctttccatgatcttcaacca |
200 |
Q |
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| T |
7289736 |
gttaattttctaaagaacaataactcatcatttcttcaatgccaattgatctacattcttgtttgaacactatccttattctttccatgatcttcaacca |
7289637 |
T |
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| Q |
201 |
tcttcaaaatacactcaaaagt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
7289636 |
tcttcaaaatacactcaaaagt |
7289615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 1196757 - 1196967
Alignment:
| Q |
13 |
aagatggataaaaatttgcaacatccaataatttttaattattatatttatctacacaatggactttgaggatgatgagaacaagcgagttaattttcta |
112 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
1196757 |
aagatggataaaaatttgcaacatccaataatatt-aattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttcta |
1196855 |
T |
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| Q |
113 |
aagaacaataactcatcatttcttcaatgccaattgatctacattcttg-tttgaaca-atatccttattctttccatgatcttcaaccatcttcaaaat |
210 |
Q |
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|||||||||||| |||||| |||||||||| |||||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
1196856 |
aagaacaataacccatcatctcttcaatgctaattgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaat |
1196955 |
T |
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| Q |
211 |
acactcaaaagt |
222 |
Q |
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| T |
1196956 |
actctcaaaagt |
1196967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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