View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_high_10 (Length: 497)
Name: NF19418_high_10
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 10429163 - 10428696
Alignment:
| Q |
18 |
agtgtatgcatgtttttcatgaacattgtgttgctcggtggcttaaacaatgtagctttcacaatcgtttatattcttgtccagtgtgtcgttctcaaat |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10429163 |
agtgtatgcatttttttcatgaacattgtgttgctcggtggcttaaacaatgtagctttcacaatcgtttatattcttgtccagtgtgtcgttctcaaat |
10429064 |
T |
|
| Q |
118 |
tcaatgatcacttttttagataataattgatgtttttacagaaactttgaatagaattgatataagtgtttgnnnnnnn-aaagtattttagtatttaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10429063 |
tcaatgatcacttttttagataataattgatgtttttacagaaactttgaatagaattgatataagtgtttgttttttttaaagtattttagtatttaga |
10428964 |
T |
|
| Q |
217 |
attttatcataatttagttcttaaaagtacataatgttcaacacagcctgcccaaattttttattgaaagaatatctctaccttctaagttctctcttcc |
316 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10428963 |
attttatcataatttagttcttaaaagttcataatgttcaacacagcctgcccaaattttttattgaaagaatatct--accttctaagttctctcttcc |
10428866 |
T |
|
| Q |
317 |
ttcttcttcattcacgaaataacgatcattttgtggtcattttttgacccataatcatccatcgacatcagttttttcttattttaattgaaacaagtgg |
416 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
10428865 |
ttcttcttcattcacgaaataacgatgattttgtggtcattttttgacccataatcatccatctacatcagttttttcatattttaattgaaacaattgg |
10428766 |
T |
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| Q |
417 |
tttcacataaaacatgtttttcttttgtgatttcgtcatctaagtataacattggtttattctctgtctt |
486 |
Q |
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| T |
10428765 |
tttcacataaaacatgtttttcttttgtaatttcgtcatctaagtacaacattggtttgttctctgtctt |
10428696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 10381465 - 10381356
Alignment:
| Q |
18 |
agtgtatgcatgtttttcatgaacattgtgttgctcggtggcttaaacaatgtagctttcacaatcgtttatattcttgtccagtgtgtcgttctcaaat |
117 |
Q |
| |
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|||| ||||||||||| ||| |||| ||||||||||||||||||| || ||| || || |||||| |||||||| || ||| |||||||||| |||| |
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| T |
10381465 |
agtgcatgcatgttttccatcaacaatgtgttgctcggtggcttatgcagtgttgcattagcaatcgattatattcctgcccattgtgtcgttccgaaat |
10381366 |
T |
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| Q |
118 |
tcaatgatca |
127 |
Q |
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|||||||||| |
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| T |
10381365 |
tcaatgatca |
10381356 |
T |
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