View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_high_11 (Length: 491)
Name: NF19418_high_11
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 476
Target Start/End: Complemental strand, 36410386 - 36409938
Alignment:
| Q |
30 |
attctcatttcaattgaatacaactcaacatgattaattgtgt--ttgggaatacggtggtaagacaataaacatgtgttcataa--aggtaaataatta |
125 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36410386 |
attctcatttaaattgaatacaactcaacatgattaattgtgtgtttgagaacacggtggtaagacaataaacatgtgttcataagaaggtaaataatta |
36410287 |
T |
|
| Q |
126 |
tatatggtttctgatcaaatatgagttttcacgttggtaattttgatttccaaatagtacatgctaattaagaagcataaacaaggacgctttttatgca |
225 |
Q |
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||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36410286 |
tat--ggtttctgatcaaacatgggttttcacgttggtaattttgatttccaaatagtacatgctaattaagaagcataaacaaggacgctttttatgca |
36410189 |
T |
|
| Q |
226 |
tgcaagtgagcagtatttgactacacagacacaaagattgacccgtaagtatctaatgaaggatgctttttatgcatgcaagttgagcttggcagttagc |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36410188 |
tgcaagtgagcagtatttgactacacagacacaaagattgacccgtaagtatctaataaaggatgctttttatgcatgcaagttgagcttggcagttagc |
36410089 |
T |
|
| Q |
326 |
tacatacctcaatgggtcatggactcatggtccgtcgttacagtgacatgtataagcgatggtaaacttcctggcaaattcaaggccttaccaaaacgga |
425 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36410088 |
tacgtacctcaatgggtcatggactcatggtccgtcgttacagtgacatgtataagcgatggtaaatttcctggcaaattcaaggccttaccaaaacgga |
36409989 |
T |
|
| Q |
426 |
tagcaaaatgaaatcggtcatcgagcagggtctatatttcataagcttttt |
476 |
Q |
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| T |
36409988 |
tagcaaaatgaaatcggtaatcgagcagggtctatatttcataagcttttt |
36409938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 476
Target Start/End: Complemental strand, 36424552 - 36424104
Alignment:
| Q |
30 |
attctcatttcaattgaatacaactcaacatgattaattgtgt--ttgggaatacggtggtaagacaataaacatgtgttcataa--aggtaaataatta |
125 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36424552 |
attctcatttaaattgaatacaactcaacatgattaattgtgtgtttgagaacacggtggtaagacaataaacatgtgttcataagaaggtaaataatta |
36424453 |
T |
|
| Q |
126 |
tatatggtttctgatcaaatatgagttttcacgttggtaattttgatttccaaatagtacatgctaattaagaagcataaacaaggacgctttttatgca |
225 |
Q |
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||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424452 |
tat--ggtttctgatcaaacatgggttttcacgttggtaattttgatttccaaatagtacatgctaattaagaagcataaacaaggacgctttttatgca |
36424355 |
T |
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| Q |
226 |
tgcaagtgagcagtatttgactacacagacacaaagattgacccgtaagtatctaatgaaggatgctttttatgcatgcaagttgagcttggcagttagc |
325 |
Q |
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| T |
36424354 |
tgcaagtgagcagtatttgactacacagacacaaagattgacccgtaagtatctaataaaggatgctttttatgcatgcaagttgagcttggcagttagc |
36424255 |
T |
|
| Q |
326 |
tacatacctcaatgggtcatggactcatggtccgtcgttacagtgacatgtataagcgatggtaaacttcctggcaaattcaaggccttaccaaaacgga |
425 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36424254 |
tacgtacctcaatgggtcatggactcatggtccgtcgttacagtgacatgtataagcgatggtaaatttcctggcaaattcaaggccttaccaaaacgga |
36424155 |
T |
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| Q |
426 |
tagcaaaatgaaatcggtcatcgagcagggtctatatttcataagcttttt |
476 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36424154 |
tagcaaaatgaaatcggtaatcgagcagggtctatatttcataagcttttt |
36424104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 36415688 - 36415539
Alignment:
| Q |
81 |
acggtggtaagacaataaacatgtgttcataa--aggtaaataattatatatggtttctgatcaaatatgagttttcacgttggtaattttgatttccaa |
178 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
36415688 |
acggtggtaagacaataaacatgtgttcataagaaggtaaataattac-tattgtttctggtcaaacatgagttttcatgttggtaattttgatttccaa |
36415590 |
T |
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| Q |
179 |
a----tagtacatgctaattaagaagcataaacaaggacgctttttatgcatgca |
229 |
Q |
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| || ||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
36415589 |
aatagtactacatgc----taagaagcataaacaaggacgcttttgatgcatgca |
36415539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 36415513 - 36415454
Alignment:
| Q |
279 |
taatgaaggatgctttttatgcatgcaagttgagcttggcagttagctacatacctcaat |
338 |
Q |
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|||| ||||| |||||||||||||||| ||| ||||||||||||||| | ||||||||| |
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| T |
36415513 |
taataaaggaggctttttatgcatgcatgttaagcttggcagttagcaatgtacctcaat |
36415454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 36415717 - 36415688
Alignment:
| Q |
30 |
attctcatttcaattgaatacaactcaaca |
59 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36415717 |
attctcatttcaattgaatacaactcaaca |
36415688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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