View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_high_15 (Length: 440)
Name: NF19418_high_15
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 46677035 - 46677457
Alignment:
| Q |
16 |
ccaaggatatcaagcccttttacttggaacattgtccaaagattttcccacaacagaagtaagtatacatattcaaaccaattgcacttattctggtgca |
115 |
Q |
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| T |
46677035 |
ccaaggatatcaagcccttttacttggaacattgtccaaagattttcccacaacagaagtacgtatacatattcaaaccaattgcacttattctggtgca |
46677134 |
T |
|
| Q |
116 |
ttaagttcattgaatagcttatgtatctgataaataaatataatttgtattaatggttgaacttatgcaggcacatgttgggatcggtggggaaattgtt |
215 |
Q |
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| T |
46677135 |
ttaagttcattgaataacttatgtatctgataaatatatataatttgtattaatggttgaacttatgcaggcacatgttgggatcggtggggaaattgtt |
46677234 |
T |
|
| Q |
216 |
caaatcattagcaggaccaaaatacgatgggaattacctacacagtgtggttagggagaagcttggggaaattcgtgtacatgaaacactcacaaatatt |
315 |
Q |
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| T |
46677235 |
caaatcattagcaggaccaaaatacgatgggaattacctacacagtgtggttagggagaagcttggggaaattcgtgtacatgaaacactcacaaatatt |
46677334 |
T |
|
| Q |
316 |
gtgatccccacgtttgacataaaaacatcgcaaccaatcattttctcatcttataagatcaagaacgccccttgcatggatgctcgactctcggacatat |
415 |
Q |
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| T |
46677335 |
gtgatccccacgtttgacataaaaacatcgcaaccaatcattttctcatcttataagatcaagaacgccccttgcatggatgctcgactctcggacatat |
46677434 |
T |
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| Q |
416 |
gcatcagtacctatgctactcct |
438 |
Q |
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| T |
46677435 |
gcatcagtacctctgctgctcct |
46677457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 172 - 432
Target Start/End: Original strand, 46681168 - 46681428
Alignment:
| Q |
172 |
ttgaacttatgcaggcacatgttgggatcggtggggaaattgttcaaatcattagcaggaccaaaatacgatgggaattacctacacagtgtggttaggg |
271 |
Q |
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||||||| ||||||| || |||| ||||| | || |||||||||| |||||| | |||||||||||| |||||||| ||||| ||| ||||| |||| |
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| T |
46681168 |
ttgaactcatgcagggacttgtttggatcatttggaaaattgttcagatcattggtaggaccaaaatatgatgggaaataccttcacgaagtggtgaggg |
46681267 |
T |
|
| Q |
272 |
agaagcttggggaaattcgtgtacatgaaacactcacaaatattgtgatccccacgtttgacataaaaacatcgcaaccaatcattttctcatcttataa |
371 |
Q |
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| T |
46681268 |
agaagttgggggaaattcgtgtgcacgagacgctgaccaatattgtgattcccacatttgacataaaaacaatgcaaccaattattttctcatcttataa |
46681367 |
T |
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| Q |
372 |
gatcaagaacgccccttgcatggatgctcgactctcggacatatgcatcagtacctatgct |
432 |
Q |
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| T |
46681368 |
gatcaagaaaactccatgcatggatgctcgactctcagacatatgtatcagcacctctgct |
46681428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 46681017 - 46681077
Alignment:
| Q |
16 |
ccaaggatatcaagcccttttacttggaacattgtccaaagattttcccacaacagaagta |
76 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||| |
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| T |
46681017 |
ccaaggatatcaagcccttttacttggagcattctccaaagatcttcccacaacaaaagta |
46681077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 6091045 - 6090991
Alignment:
| Q |
16 |
ccaaggatatcaagcccttttacttggaacattgtccaaagattttcccacaaca |
70 |
Q |
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|||| |||||||||||||||||| | |||||||| || || |||||||||||||| |
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| T |
6091045 |
ccaaagatatcaagcccttttaccttgaacattgccctaaaattttcccacaaca |
6090991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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