View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_high_29 (Length: 305)
Name: NF19418_high_29
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_high_29 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 16909006 - 16908715
Alignment:
| Q |
14 |
agatgattcagataaagctggtagaggacatggtaaagaagaagatgaagaagaaggggtgcttaagtggcttgattcaaagaaagatgattctgttctc |
113 |
Q |
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| T |
16909006 |
agatgattcagataaagctggtagaggacatggtaaagaagaagatgaagaagaaggggtgcttaagtggcttgattcaaagaaatatgattctgttctt |
16908907 |
T |
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| Q |
114 |
tatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgtta |
213 |
Q |
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| T |
16908906 |
tatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgtta |
16908807 |
T |
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| Q |
214 |
gaaaaatcgaagatgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaggaaagaaacaaaggctatttgatatgg |
305 |
Q |
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| T |
16908806 |
ggaaaatcgaagatgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaagaaagaaacaaaggctatttgatatgg |
16908715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 14869659 - 14869944
Alignment:
| Q |
14 |
agatgattcagataaagctggtagaggacatggtaaagaagaagatgaagaagaaggggtgcttaagtggcttgattcaaagaaagatgattctgttctc |
113 |
Q |
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| T |
14869659 |
agatgattcggataaagcgggtagagggcatggtaaagaagaagatgaagatgaaggagtgcttaagtggcttgattctaagaaagatgattctgttctc |
14869758 |
T |
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| Q |
114 |
tatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgtta |
213 |
Q |
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| T |
14869759 |
tatgttagttttgggagcatgaacaagttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgtta |
14869858 |
T |
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| Q |
214 |
gaaaaatcgaagatgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaggaaagaaacaaaggctatttgatatgg |
305 |
Q |
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| T |
14869859 |
ggaaaattgaagatgttgaagatggtga------tttttttacggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatgg |
14869944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 73 - 212
Target Start/End: Complemental strand, 14710396 - 14710257
Alignment:
| Q |
73 |
tgcttaagtggcttgattcaaagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctca |
172 |
Q |
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| T |
14710396 |
tgcttaaatggcttaactctaagaaagagaattctgttctctatctaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctca |
14710297 |
T |
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| Q |
173 |
tgcacttgaagattctggccatgatttcatttgggttgtt |
212 |
Q |
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| T |
14710296 |
tgcacttgaagcttcaagccatgatttcatttgggttgtt |
14710257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 26260388 - 26260450
Alignment:
| Q |
157 |
ttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaa |
219 |
Q |
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| T |
26260388 |
ttgttgaaatagctcatggacttgaaaattcaggtcataatttcatttgggttgttaggaaaa |
26260450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 26204405 - 26204459
Alignment:
| Q |
161 |
tgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttaga |
215 |
Q |
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| T |
26204405 |
tgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttaga |
26204459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 26224043 - 26224097
Alignment:
| Q |
161 |
tgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttaga |
215 |
Q |
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| T |
26224043 |
tgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttaga |
26224097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 26227488 - 26227550
Alignment:
| Q |
157 |
ttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaa |
219 |
Q |
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| T |
26227488 |
ttgtagaaatagctcatggtcttgaaaattcaggtcataatttcatttgggttgttaggaaaa |
26227550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 17572779 - 17572660
Alignment:
| Q |
93 |
aagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggcc |
192 |
Q |
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| T |
17572779 |
aagaaagagaattctgttctctatgtaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctcatgcacttgaaacttcaagcc |
17572680 |
T |
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| Q |
193 |
atgatttcatttgggttgtt |
212 |
Q |
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| T |
17572679 |
atgatttcatttgggttgtt |
17572660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 17619933 - 17620052
Alignment:
| Q |
93 |
aagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggcc |
192 |
Q |
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| T |
17619933 |
aagaaagagaattctgttatctatgtaagttttggcagcttaaacaagttcccaccatctcaactcattgaaatagctcatgcacttgaagcttcaagcc |
17620032 |
T |
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| Q |
193 |
atgatttcatttgggttgtt |
212 |
Q |
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| T |
17620033 |
ataatttcatttgggttgtt |
17620052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 5995166 - 5995045
Alignment:
| Q |
98 |
agatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgat |
197 |
Q |
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| T |
5995166 |
agatggttctgttttatatgtaagttttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcacttgaaaattcaggtcataat |
5995067 |
T |
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| Q |
198 |
ttcatttgggttgttagaaaaa |
219 |
Q |
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|||||||||||||||||||||| |
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| T |
5995066 |
ttcatttgggttgttagaaaaa |
5995045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 12613434 - 12613541
Alignment:
| Q |
76 |
ttaagtggcttgattcaaagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgc |
175 |
Q |
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|||| |||||| |||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||| | ||||||| |||||||||||||||| |
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| T |
12613434 |
ttaaatggcttaattccaagaaagagaattctgttctctatgtaagttttggtagcatgaacaagttcccatcatctcaactcattgaaatagctcatgc |
12613533 |
T |
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| Q |
176 |
acttgaag |
183 |
Q |
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| T |
12613534 |
acttgaag |
12613541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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