View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_high_3 (Length: 899)
Name: NF19418_high_3
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 558
Target Start/End: Complemental strand, 4247840 - 4247302
Alignment:
| Q |
11 |
catcatcatcctgttaagtgaaaaaatgtcggcaaaaaattgaaaatataacaataatttatgttctcccaacaaaggaaaagatgaaatgttttataat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4247840 |
catcctcatcctgttaagtgaaaaaatgtcggcaaaaaattgaaaatataacaataatttatgttctcccaacaaatgaaaagatgaaatgttttataat |
4247741 |
T |
|
| Q |
111 |
agacagaccaccaacttatcgcaaacttcatatatagaatttgcaatctcaacagctcggtcaaagacattatcgagttcttcgtctgacttcaaagata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247740 |
agacagaccaccaacttatcgcaaacttcatatatagaatttgcaatctcaacagctcggtcaaagacattatcgagttcttcgtctgacttcaaagata |
4247641 |
T |
|
| Q |
211 |
cagccttcaatacattaagaattataggaatggtttcttttacttgctgaaactgacgcctccgaatggatataaggactgaaaaggaaaaataggtatg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4247640 |
cagccttcaatacattaagaattataggaatggtttcttttacttgctgaaactgacgcctccggatggatataaggactgaaaaggaaaaataggtatg |
4247541 |
T |
|
| Q |
311 |
aatgaaaacatccaaggaatatggcatcaaatcattgaaagagcgagcgaaacacagatgctcgaccaaaaactggcattaaggatttgcatttcatcaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247540 |
aatgaaaacatccaaggaatatggcatcaaatcattgaaaga----gcgaaacacagatgctcgaccaaaaactggcattaaggatttgcatttcatcaa |
4247445 |
T |
|
| Q |
411 |
caaatataatatgcatagaaaatgaacatgataaagtgattggacaaattctccattggagacaaccccaaacaaaatgttatgtacaatatgcagctaa |
510 |
Q |
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| T |
4247444 |
ca-----aatatgcatagaaaatgaacatgataaagtgattggacagattctccattggagacaaccccaaacaaaatgttatgtacaatatgcagctaa |
4247350 |
T |
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| Q |
511 |
caagactatcggtgatttgatatcaagctcaagctaaggaccttcaaa |
558 |
Q |
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| T |
4247349 |
caagactattggtgatttgatatcaagctcaagctaaggaccttcaaa |
4247302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 597 - 883
Target Start/End: Complemental strand, 4247263 - 4246989
Alignment:
| Q |
597 |
gtgatttgacataaaattccaatttcaaaataagatttgtttattcctctctgtattggaatggaaggttgacattcatatttcatatacactctctcat |
696 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |
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| T |
4247263 |
gtgatttgacataaaattccaatttcaaaataagatttgtttattcctctctgtattgcaa-----ggttgacatt-atatttcatatacactctctcat |
4247170 |
T |
|
| Q |
697 |
ctcagatatccaaatatcaacttgaatatcatccaagagcaatattgaacattttcacacaaaaaacaaacaaaatacatttctttctcacccatgacaa |
796 |
Q |
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| T |
4247169 |
ctcagatatccatatatcaacttgaatatcatccaagagcaatattgaacattttcacacaaaaaacaaacaaaatacatttctttctcacccat----- |
4247075 |
T |
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| Q |
797 |
tgacataccactttactcaaagaaatactttgctaggatttgtttggtatgagtccagttaaactcaagattcaagcaactactcca |
883 |
Q |
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| T |
4247074 |
-gacataccactttactcaaagaaatactttgctaggatttgtttggtatgagtccagttaaactcaagattcaagcaactactcca |
4246989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 25 - 351
Target Start/End: Original strand, 2402245 - 2402573
Alignment:
| Q |
25 |
taagtgaaaaaatgtcggcaaaaaa-ttgaaaatataacaataatttatgttctcccaacaaaggaaaagatgaaatgttttataatagacagaccacca |
123 |
Q |
| |
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|||||||||||||||| |||||||| |||||||| | ||||||||||||||||| || |||| ||| |||||||||||||| ||||| ||||||||| |
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| T |
2402245 |
taagtgaaaaaatgtcagcaaaaaagttgaaaatcaatcaataatttatgttctcataaaaaagaaaaggatgaaatgttttaaaataggaagaccacca |
2402344 |
T |
|
| Q |
124 |
acttatcgcaaacttcatatatagaatttgcaatctcaacagctcggtcaaagacattatcgagttcttcgtctgacttcaaagatacagccttcaatac |
223 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||| | | ||| |||| || |||| |||| |||||||| |
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| T |
2402345 |
acttactgcaaacttcatatatagaatttgaaatctcaacagttctgtcaaagacatcatcaattgctttatctgtctccaaatgtacaaccttcaatga |
2402444 |
T |
|
| Q |
224 |
attaagaattataggaatggtttcttttacttgctgaaactgacgcctccgaatggatataaggactgaaaa-ggaaaaataggtatgaatgaaaacatc |
322 |
Q |
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||||||||| ||||| | || ||||||||| |||||||||| || | | || |||||||||||||| | ||||||||||||| ||||||||||| |
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| T |
2402445 |
attaagaatcgaaggaacaactgctcttacttgctcaaactgacgcatctgggtagagataaggactgaaaatgaaaaaataggtatgtatgaaaacatc |
2402544 |
T |
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| Q |
323 |
caaggaatatggcatcaaatcattgaaag |
351 |
Q |
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|||||||| |||| |||| |||||||||| |
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| T |
2402545 |
caaggaatgtggcgtcaactcattgaaag |
2402573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 2798495 - 2798447
Alignment:
| Q |
11 |
catcatcatcctgttaagtgaaaaaatgtcggcaaaaaattgaaaatat |
59 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798495 |
catcatcatcctgttaagtgaaaaaatgtcggcaaaaaattgaaaatat |
2798447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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