View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19418_high_34 (Length: 271)
Name: NF19418_high_34
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 10068210 - 10068446
Alignment:
| Q |
16 |
atacctagtgagtggtggaataggccaaaaaattgactatgtcgtggaaagaaactttcatcaaggttattaaaaaattttaatctaggcattagttaac |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10068210 |
atacctagtgagtagtggaataggccaaaaaattgactatgtcgtggaaagaaactttcatcaaggttattaaaaaactttaatctaggcattagttaac |
10068309 |
T |
|
| Q |
116 |
ttcatatataattaatcagacaaagttcgtttgtgtaagtaactggaaaaaggaatttgtctatgattgattcagtctgtgggatttgttaatttaaatg |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
10068310 |
ttcaaatataattaatcagacaaagttcatttgtgtaagtaactggaaaaaagaatttgtctatgattgatacagtctatgggatttgttaatttaaatg |
10068409 |
T |
|
| Q |
216 |
tcaaccttgatgattaagataaaattcatattaagtg |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10068410 |
tcaaccttgatgattaagataaaattcatattaagtg |
10068446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 10062819 - 10062935
Alignment:
| Q |
136 |
caaagttcgtttgtgtaagtaactggaaaaaggaatttgtctatgattgattcagtctgtgggatttgttaatttaaatgtcaaccttgatgattaagat |
235 |
Q |
| |
|
|||||||||| | || |||||| ||||||||| | |||||| |||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
10062819 |
caaagttcgtctatgcaagtaattggaaaaagtattttgtccatgattgatttagtccgtgggatttgttgatttaaatgtcaaccttaatgattaagat |
10062918 |
T |
|
| Q |
236 |
aaaattcatattaagtg |
252 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
10062919 |
aaaattcatattgagtg |
10062935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 10062395 - 10062450
Alignment:
| Q |
26 |
agtggtggaataggccaaaaaattgactatgtcgtggaaagaaactttcatcaagg |
81 |
Q |
| |
|
|||| |||| |||||| |||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
10062395 |
agtgatggactaggcctaaaagttgaccatgtcgtgaaaagaaactttcatcaagg |
10062450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University