View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_high_37 (Length: 247)
Name: NF19418_high_37
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 29063330 - 29063562
Alignment:
| Q |
1 |
aagcttatcttaaatctttgttcaacaaaactagttgttcagagaaagcatgtgctagtgatcctaacaacaaggttggaattnnnnnnnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063330 |
aagcttatcttaaatctttgttcaacaaaactagttgttcagagaaagcatgtgctagtgatcctaacaacaaggttggaattaaaagcaaaaacaaaaa |
29063429 |
T |
|
| Q |
101 |
ctcatttgaggttttttgtgaggaaagtaagaaacaagttaaaagagacatggttgaagatgattttgtcaaccataggaaatctttctctggagtggtt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063430 |
ctcatttgaggttttttgtgaggaaaataagaaacaagttaaaagagacatggttgaagatgattttgtcaaccataggaaatctttctctggagtggtt |
29063529 |
T |
|
| Q |
201 |
caaagacattgtggtagcaacaaggtttcatct |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29063530 |
caaagacattgtggtagcaacaaggtttcatct |
29063562 |
T |
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