View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_12 (Length: 488)
Name: NF19418_low_12
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 44456636 - 44456161
Alignment:
| Q |
1 |
acagagtaaattaattggattgtgtgtatgcacaatcgcacgatacatgctaaactaacaggacatcaactttgttaaatttcaagcctttgcattaatg |
100 |
Q |
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| T |
44456636 |
acagagtaaatcaattggattgtgtgtatgcacaatcgcacgatacatgctaaactaacaggacatcaactttgttaaatttcaagcctttgcattaatg |
44456537 |
T |
|
| Q |
101 |
cagataagtgttgagttgggaatttatttttgaatgatgtaaaaatgcttgacacacacattccgtacaggaaagtcagtgcctaacttcctattacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44456536 |
cagataagtgttgagttgggaatttatttttgaatgatgtaaaaatgcttgacacacacattccgtacaggaaagtcagtgcctaacttcctattacaat |
44456437 |
T |
|
| Q |
201 |
tgcattcagtgtcatgatctatatcctataagaaaaaagtagccatcaaaatcgaataaactaaataatatgaaacacaacacaaaattctcatctgcac |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44456436 |
tgcattcagtgtcatgatctatatcctaaaagaaaaaagtagccatcaaaatcgaataaactaaataatatgaaacacaacacaaaattctcatctgcac |
44456337 |
T |
|
| Q |
301 |
tgatcaagtgaacaaatatattaaatgcgtttaaactgcatttagtgaaacatgtatttatcgcaataggttcaaatagtcaaaaagacaaaataaccac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
44456336 |
tgatcaagtgaacaaatatattaaatgcgtttaaactgcatttagtgaaacatgtatttatcacagtaggttcaaatagtcaaaaagacaaaataaccac |
44456237 |
T |
|
| Q |
401 |
attgatccattaggcctgaaaaatgaaacaaggaaagaacaaaagatgtaactaggtaatttttcatgaacctgat |
476 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44456236 |
attgatccattaggcctgaaaaatgaaacaaggaaagaacaaaagatgtaactaggtaatttttcatgaacctgat |
44456161 |
T |
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