View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_14 (Length: 442)
Name: NF19418_low_14
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 423
Target Start/End: Original strand, 52546231 - 52546630
Alignment:
| Q |
8 |
cgaagaatatgactgcaacaaatcgatattgtacaagttcaagctgataatttattagtttgttattggaatgaagaaaataactaagtgagaattgaca |
107 |
Q |
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| T |
52546231 |
cgaagactatgactgcaacaaatcgatattgtacaagttctagctgataatttattagtttgttattgaaatggagaaaataactaagtgagaattgaca |
52546330 |
T |
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| Q |
108 |
gtaattgaaatggtaaatataccctttgaggagcatcatatgatttgtgagcatgacaagttccttctcgaaaatttccacaagtaccttgtggcaatcc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
52546331 |
gtaattgaaatggtaaatataccctttgaggagcatcatatgatttgtgagcatgacaagttccttctcgaaagtttcgacaagtaccttgtggcaatcc |
52546430 |
T |
|
| Q |
208 |
atagctagcaaatttaatttgggtgatcttttgtccaatgggacaccacaagtcagctagtctattaacttggttactaagtgttggctgattttcatat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
52546431 |
atagctagcaaatttaatttgggtgatcttttgtccaatgggacaccgcaagtcagctag----------------ctaagtgttggctgattttcatat |
52546514 |
T |
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| Q |
308 |
atgtcagcacacacacttcctgttgttcttttcaccaaagatattccattagggtcacctccccattcttcaaacacaaccaaataatttccacttgggt |
407 |
Q |
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| T |
52546515 |
atgtcagcacacacacttcctgttgttcttttcaccaaagatattccattagggtcacctccccattcttcaaacacaaccaaataatttccacttgggt |
52546614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 5233291 - 5233244
Alignment:
| Q |
331 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
378 |
Q |
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| T |
5233291 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
5233244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 42986470 - 42986534
Alignment:
| Q |
341 |
accaaagatattccattagggtcacctccccattcttcaaacacaaccaaataatttccacttgg |
405 |
Q |
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|||||| |||| ||||||||||| || ||| ||||||||||||||||||| |||||||| |||| |
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| T |
42986470 |
accaaaaatatcccattagggtctccacccaattcttcaaacacaaccaataaatttccagttgg |
42986534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 17129188 - 17129129
Alignment:
| Q |
331 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttcaaacacaaccaa |
390 |
Q |
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| T |
17129188 |
tgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaa |
17129129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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