View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_16 (Length: 394)
Name: NF19418_low_16
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_16 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Complemental strand, 29963690 - 29963303
Alignment:
| Q |
7 |
gttcaattacatgatcctcnnnnnnnnncttccctattttctcccttgtaatactaaaatattgaaggacccctcaattaatacataagaggaaaaaaca |
106 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963690 |
gttcaattacatgatcctctttttttttcttccctattttctcccttgtaatactaaaatattgaaggacccctcaattaatacataagaggaaaaaaca |
29963591 |
T |
|
| Q |
107 |
tgaaggacccaaaactgtgcaatataataaagtgaccaatgaaaaatgtacagctacgatacttaagagacttaaaataaaatcaagtcaataggtaact |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963590 |
tgaaggacccaaaactgtgcaatataataaagtgaccaatgaaaaatgtacagctacgatacttaagagacttaaaataaaatcaagtcaataggtaact |
29963491 |
T |
|
| Q |
207 |
aatttcttcaacttttacacacatacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963490 |
aatttcttcaacttttacacacatacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttctt |
29963391 |
T |
|
| Q |
307 |
gaaccaacttctttaaatcaaattgctcatacttacccctacccaatagcatcttatacacaatagcttcaataagattctcaacaat |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| |
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| T |
29963390 |
gaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctacaat |
29963303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 30011108 - 30011495
Alignment:
| Q |
7 |
gttcaattacatgatcctcnnnnnnnnncttccctattttctcccttgtaatactaaaatattgaaggacccctcaattaatacataagaggaaaaaaca |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30011108 |
gttcaattacatgatcctctttttttttcttccctattttctcccttgtaatactaaaatattgaaggacccctcaattaatacataagaggaaaaaaca |
30011207 |
T |
|
| Q |
107 |
tgaaggacccaaaactgtgcaatataataaagtgaccaatgaaaaatgtacagctacgatacttaagagacttaaaataaaatcaagtcaataggtaact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30011208 |
tgaaggacccaaaactgtgcaatataataaagtgaccaatgaaaaatgtacagctacgatacttaagagacttaaaataaaatcaagtcaataggtaact |
30011307 |
T |
|
| Q |
207 |
aatttcttcaacttttacacacatacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30011308 |
aatttcttcaacttttacacacatacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttctt |
30011407 |
T |
|
| Q |
307 |
gaaccaacttctttaaatcaaattgctcatacttacccctacccaatagcatcttatacacaatagcttcaataagattctcaacaat |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| |
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| T |
30011408 |
gaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctacaat |
30011495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 230 - 394
Target Start/End: Complemental strand, 29991072 - 29990908
Alignment:
| Q |
230 |
tacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaat |
329 |
Q |
| |
|
||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||| |
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| T |
29991072 |
tacctgaaggtcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatccttcttgaaccaacttcttcaaatcaaat |
29990973 |
T |
|
| Q |
330 |
tgctcatacttacccctacccaatagcatcttatacacaatagcttcaataagattctcaacaat |
394 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||| ||||| |
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|
| T |
29990972 |
tgctcatacttacctctacccaatatcatcttatacacaatatcttcaataacattctctacaat |
29990908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 230 - 393
Target Start/End: Complemental strand, 29952362 - 29952199
Alignment:
| Q |
230 |
tacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaat |
329 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||||| | | |||||||||| | ||||||| |||||| |
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| T |
29952362 |
tacctgaagatcaaatacacctagccaaggaacataatcagccagattaaaagctccaaccaaagccaatacgtcttgaaccaccctctttaagtcaaat |
29952263 |
T |
|
| Q |
330 |
tgctcatacttacccctacccaatagcatcttatacacaatagcttcaataagattctcaacaa |
393 |
Q |
| |
|
|| |||||||| | || |||||||| |||||||||||||||| | |||||||||||||| |||| |
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| T |
29952262 |
tgatcatacttgctccgacccaatatcatcttatacacaatatcctcaataagattctctacaa |
29952199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 227 - 393
Target Start/End: Original strand, 30044937 - 30045103
Alignment:
| Q |
227 |
acatacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatca |
326 |
Q |
| |
|
||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |||| || ||| |
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|
| T |
30044937 |
acatacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatccttcttgaaccaaactcttcaagtca |
30045036 |
T |
|
| Q |
327 |
aattgctcatacttacccctacccaatagcatcttatacacaatagcttcaataagattctcaacaa |
393 |
Q |
| |
|
|||||||||||||||| || ||| || | || ||||||||||||| |||| || |||||||| |||| |
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| T |
30045037 |
aattgctcatacttactccgaccaaacatcaacttatacacaatatcttctattagattctctacaa |
30045103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 394
Target Start/End: Complemental strand, 29999776 - 29999612
Alignment:
| Q |
230 |
tacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaat |
329 |
Q |
| |
|
||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| | || || | ||| |||| || || |||||| || |||||| |
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|
| T |
29999776 |
tacctgaaggtcaaaaatgcctagccaaggaacataatcagccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat |
29999677 |
T |
|
| Q |
330 |
tgctcatacttacccctacccaatagcatcttatacacaatagcttcaataagattctcaacaat |
394 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
29999676 |
tgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctcgacaat |
29999612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 388
Target Start/End: Complemental strand, 29944241 - 29944083
Alignment:
| Q |
230 |
tacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaat |
329 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||||||||||| |||||||||||||| || ||||||| | |||||||||||| |||||| |||| |
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|
| T |
29944241 |
tacctgaagatcaaatgtgcctaaccaaggaacataatcagccatattaaaagctccaatcaaagccattacgtcttgaaccaacctctttaggtcaata |
29944142 |
T |
|
| Q |
330 |
tgctcatacttacccctacccaatagcatcttatacacaatagcttcaataagattctc |
388 |
Q |
| |
|
|| |||||||||| || |||||| | |||||||||||||||| | || |||| |||||| |
|
|
| T |
29944141 |
tgatcatacttactccgacccaacaccatcttatacacaatatcctctataacattctc |
29944083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 230 - 393
Target Start/End: Complemental strand, 30006214 - 30006051
Alignment:
| Q |
230 |
tacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaat |
329 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||||||||||||||||||||||| | || ||||||| ||||| |||| ||||| || | |||||| |
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|
| T |
30006214 |
tacctgaaggtcaaaaacgcctagccaaggtacataatcagccagattaaaagctcccatcaaagccattgcttctagaactaacttattcatgtcaaat |
30006115 |
T |
|
| Q |
330 |
tgctcatacttacccctacccaatagcatcttatacacaatagcttcaataagattctcaacaa |
393 |
Q |
| |
|
||||||||||||| || ||| || | |||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
30006114 |
tgctcatacttactccgaccaaacatcatcttatacacaatatcctcaataagattctctacaa |
30006051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 388
Target Start/End: Original strand, 30070794 - 30070928
Alignment:
| Q |
254 |
ccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaat |
353 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || | ||| | ||| ||||||||| || || || ||||||||||||||||||| || || || |
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|
| T |
30070794 |
ccaaggaacataatcagccagattaaaagctccaatcaaaaccaattcttgttgaaccaaatttttcaagtcaaattgctcatacttactccgtccaaac |
30070893 |
T |
|
| Q |
354 |
agcatcttatacacaatagcttcaataagattctc |
388 |
Q |
| |
|
| || ||||||||||||| |||| || |||||||| |
|
|
| T |
30070894 |
atcaacttatacacaatatcttctattagattctc |
30070928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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