View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_18 (Length: 371)
Name: NF19418_low_18
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 52546305 - 52546630
Alignment:
| Q |
11 |
agaatataactaagtgagaattgacagtaattgaaatggtaaatataccctttgaggagcatcatatgatttgtgagcatgacaagttccttctcgaaaa |
110 |
Q |
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| T |
52546305 |
agaaaataactaagtgagaattgacagtaattgaaatggtaaatataccctttgaggagcatcatatgatttgtgagcatgacaagttccttctcgaaag |
52546404 |
T |
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| Q |
111 |
tttccacaagtaccttgtggcaatccatagctagcaaatttaatttgggtgatcttttgtccaatgggacaccacaagtcagctagtctattaacttggt |
210 |
Q |
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| T |
52546405 |
tttcgacaagtaccttgtggcaatccatagctagcaaatttaatttgggtgatcttttgtccaatgggacaccgcaagtcagctag-------------- |
52546490 |
T |
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| Q |
211 |
tactaagtgttggctgattttcatatatgtcagcacacacacttcctgttgttcttttcaccaaagatattccattagggtcacctccccattcttcaaa |
310 |
Q |
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| T |
52546491 |
--ctaagtgttggctgattttcatatatgtcagcacacacacttcctgttgttcttttcaccaaagatattccattagggtcacctccccattcttcaaa |
52546588 |
T |
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| Q |
311 |
cacaaccaaataatttccacttgggttcaaccatgacctagg |
352 |
Q |
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| T |
52546589 |
cacaaccaaataatttccacttgggttcaaccatgacctagg |
52546630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 5233291 - 5233244
Alignment:
| Q |
260 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
307 |
Q |
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| T |
5233291 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
5233244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 42986470 - 42986534
Alignment:
| Q |
270 |
accaaagatattccattagggtcacctccccattcttcaaacacaaccaaataatttccacttgg |
334 |
Q |
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| T |
42986470 |
accaaaaatatcccattagggtctccacccaattcttcaaacacaaccaataaatttccagttgg |
42986534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 17129188 - 17129129
Alignment:
| Q |
260 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttcaaacacaaccaa |
319 |
Q |
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| T |
17129188 |
tgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaa |
17129129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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