View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_19 (Length: 367)
Name: NF19418_low_19
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 192 - 354
Target Start/End: Original strand, 32903519 - 32903681
Alignment:
| Q |
192 |
ggctattaagctaaggtgaataagagagtcaaacaaaaataacctaaactaggtatgaaacttaattctctgggttagggtgatccttcatactatatct |
291 |
Q |
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| T |
32903519 |
ggctattaagctaaggtgaataagagagtcaaacaaaaataacctaaactaggtatgaaacttaattctcagggttagggtgatccttcatactatatct |
32903618 |
T |
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| Q |
292 |
tgggttattatgtattctttgccattgnnnnnnntaattacgtaaagttaaactgaagaagaa |
354 |
Q |
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| T |
32903619 |
tgggttattatgtattctttgccattgaaaaaaataattacgtaaagttaaactgaagaagaa |
32903681 |
T |
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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 32903285 - 32903347
Alignment:
| Q |
63 |
tgtcacattttttatatatcaaacgttcaacccgtcgatgagactaccattcacatttgaatt |
125 |
Q |
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| T |
32903285 |
tgtcacattttttatatatcaaacgttcaacccgtcgatgagactaccattcacatttgaatt |
32903347 |
T |
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