View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_20 (Length: 359)
Name: NF19418_low_20
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 29062805 - 29063157
Alignment:
| Q |
8 |
catcatcacaaatgaaaattgaaatggccactaaacaagtcactttggttcatgtagatgaagactacattgacatggaactatgttctccctcacactt |
107 |
Q |
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| T |
29062805 |
catcatcacaaatgaaaattgaaatggccactaaacaagtcactttggttcatgtagatgaagactacattgacatggaactatgttctccctcacactt |
29062904 |
T |
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| Q |
108 |
cttctcttattcttttggttctccaccaaagaataccagagagtttgaattccaaatgagtagttctatctcaaatgnnnnnnnttccaaaactacccct |
207 |
Q |
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| T |
29062905 |
cttctcttattcttttggttctccaccaaagaataccagagagtttgaattccaaatgagtagttctatctcaaatgaaaaaaattccaaaactacccct |
29063004 |
T |
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| Q |
208 |
gctgatgatctcttctacaaaggaaaactcctccctcttcacctccctcgtcgtcttcaaatggttc-aaagcttatagaaaacacaaatttagaagata |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
29063005 |
gctgatgatctcttctacaaaggaaaactcctccctcttcacctccctcgtcgtcttcaaatggttcaaaagcttctagaaaacacaaatttagaagata |
29063104 |
T |
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| Q |
307 |
acacttttcctttcacacctcccacttttgctagttacacccctcttgaaacc |
359 |
Q |
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| T |
29063105 |
acacttttcctttcacacctcccacttttgctagttacaccactcttgaaacc |
29063157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 52287784 - 52287741
Alignment:
| Q |
208 |
gctgatgatctcttctacaaaggaaaactcctccctcttcacct |
251 |
Q |
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| T |
52287784 |
gctgatgagcttttctacaaaggaaaactcctcccccttcacct |
52287741 |
T |
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