View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19418_low_22 (Length: 356)

Name: NF19418_low_22
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19418_low_22
NF19418_low_22
[»] chr1 (3 HSPs)
chr1 (13-356)||(10428301-10428647)
chr1 (15-68)||(52447395-52447447)
chr1 (13-64)||(11463110-11463161)
[»] chr5 (4 HSPs)
chr5 (13-81)||(32745998-32746066)
chr5 (37-73)||(10542986-10543022)
chr5 (22-68)||(39860311-39860357)
chr5 (16-68)||(39938261-39938313)
[»] chr4 (4 HSPs)
chr4 (14-83)||(24573624-24573693)
chr4 (25-67)||(38767321-38767363)
chr4 (17-82)||(49492669-49492734)
chr4 (37-73)||(44182310-44182346)
[»] chr3 (4 HSPs)
chr3 (16-68)||(20037645-20037697)
chr3 (8-83)||(26513058-26513133)
chr3 (36-72)||(17590132-17590168)
chr3 (36-72)||(17590182-17590218)
[»] chr8 (3 HSPs)
chr8 (13-68)||(13206170-13206224)
chr8 (13-68)||(14987959-14988014)
chr8 (13-68)||(40155060-40155115)
[»] chr7 (3 HSPs)
chr7 (21-82)||(42040904-42040966)
chr7 (13-54)||(13890199-13890240)
chr7 (24-68)||(47356414-47356458)
[»] chr2 (3 HSPs)
chr2 (13-67)||(37716132-37716186)
chr2 (13-82)||(41554921-41554990)
chr2 (13-68)||(13277902-13277957)
[»] chr6 (3 HSPs)
chr6 (25-68)||(6040641-6040684)
chr6 (14-68)||(13502901-13502955)
chr6 (25-65)||(7980473-7980513)
[»] scaffold0009 (1 HSPs)
scaffold0009 (33-70)||(53668-53705)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 10428301 - 10428647
Alignment:
Q  13 aatatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaagtaaacccaaaaaa-taatgcattcccttttatgtattgtt-at 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||     |||||||| ||    
T  10428301 aatatagcattcttaaaagcaaatttgtttaaggatataactggaataataaaaaagtaaacccaaaaaaataatgtattccct-----gtattgtttat 10428395  T
Q  111 agatttatattggtataaaagatattcatgataatcaaccat-------atttaacattgattcatggtttcttttttccgaaaaagaaatatatttatt 203  Q
    | ||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10428396 aaattcatattggtataaaagatattcatgataatcaaccatcaaccatatttaacattgattcatggtttcttttttcctaaaaagaaatatatttatt 10428495  T
Q  204 cattcgaatcggtcggttacatnnnnnnnctttgaccagaataatgtgacaaaatgaaagtgaacgaaatactcatctttcggatatgcaatattgatga 303  Q
    ||||||||||||||||||||||       |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10428496 cattcgaatcggtcggttacataaaaaa-ctttgaccggaataatgtgacgaaatgaaagtgaacgaaatactcatctttcggatatgcaatattgacga 10428594  T
Q  304 ctaaatcattgatttaatatgtaatggtcaaggttgatcagtcaatctgaatc 356  Q
    || | |||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  10428595 ctgagtcattgatttaatatgtaatggtcgaggttaatctgtcaatctgaatc 10428647  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 52447447 - 52447395
Alignment:
Q  15 tatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    |||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  52447447 tatagctttcttaaaaacaaatatgtttaag-atataactgaaataatgaaaaa 52447395  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 11463110 - 11463161
Alignment:
Q  13 aatatagcattcttaaaagcaaatttgtttaaggatataactgaaataatga 64  Q
    |||||| ||||||||||| ||||||||||||| | |||||||| ||||||||    
T  11463110 aatatatcattcttaaaaacaaatttgtttaaaggtataactggaataatga 11463161  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 32746066 - 32745998
Alignment:
Q  13 aatatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaagtaaacccaaaaa 81  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||  || ||||||||    
T  32746066 aatatagcaatctcaaaagaaaatttgtttaaggatataactgaaataatgaaaaatcaagcccaaaaa 32745998  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 10543022 - 10542986
Alignment:
Q  37 ttgtttaaggatataactgaaataatgaaaaagtaaa 73  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10543022 ttgtttaaggatataattgaaataatgaaaaagtaaa 10542986  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 39860311 - 39860357
Alignment:
Q  22 ttcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    ||||||||||||||||||||||||| || || ||||||||| |||||    
T  39860311 ttcttaaaagcaaatttgtttaagggtaaaattgaaataattaaaaa 39860357  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 39938261 - 39938313
Alignment:
Q  16 atagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    ||||||||||||||| || |||| ||||| |||||| ||| ||||||||||||    
T  39938261 atagcattcttaaaaccatatttatttaatgatatagctggaataatgaaaaa 39938313  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 24573693 - 24573624
Alignment:
Q  14 atatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaagtaaacccaaaaaat 83  Q
    |||| ||||||| |||||||||| ||||||||||||||||| ||||||| ||||| | |||| |||||||    
T  24573693 atatggcattctcaaaagcaaatctgtttaaggatataactaaaataataaaaaattcaacctaaaaaat 24573624  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 38767363 - 38767321
Alignment:
Q  25 ttaaaagcaaatttgtttaaggatataactgaaataatgaaaa 67  Q
    |||||||||||||| ||||||| || |||||||||||||||||    
T  38767363 ttaaaagcaaatttatttaagggtacaactgaaataatgaaaa 38767321  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 49492734 - 49492669
Alignment:
Q  17 tagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaagtaaacccaaaaaa 82  Q
    ||||||||||||||| ||||||||| || | ||||| ||||||||| ||||| | | |||||||||    
T  49492734 tagcattcttaaaagaaaatttgttaaacggtataattgaaataataaaaaattcaccccaaaaaa 49492669  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 44182310 - 44182346
Alignment:
Q  37 ttgtttaaggatataactgaaataatgaaaaagtaaa 73  Q
    |||||||||||||||||||  ||||||||||||||||    
T  44182310 ttgtttaaggatataactgggataatgaaaaagtaaa 44182346  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 20037645 - 20037697
Alignment:
Q  16 atagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    |||||||| ||||||||||||||||| |||||||| || ||||||||||||||    
T  20037645 atagcatttttaaaagcaaatttgttcaaggatattaccgaaataatgaaaaa 20037697  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 26513058 - 26513133
Alignment:
Q  8 cgaagaatatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaagtaaacccaaaaaat 83  Q
    |||| |||||| |||||||||||  |||||||||||| | ||||  ||||||||||||||| ||| || |||||||    
T  26513058 cgaacaatataacattcttaaaaataaatttgtttaaaggtatagttgaaataatgaaaaattaagcctaaaaaat 26513133  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 17590168 - 17590132
Alignment:
Q  36 tttgtttaaggatataactgaaataatgaaaaagtaa 72  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  17590168 tttgtttaagggtataattgaaataatgaaaaagtaa 17590132  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 17590218 - 17590182
Alignment:
Q  36 tttgtttaaggatataactgaaataatgaaaaagtaa 72  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  17590218 tttgtttaagggtataattgaaataatgaaaaagtaa 17590182  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 13206170 - 13206224
Alignment:
Q  13 aatatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    |||||| ||||||||||||||||||||||||| | |||||||||||||| ||||||    
T  13206170 aatataacattcttaaaagcaaatttgtttaa-gttataactgaaataaagaaaaa 13206224  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 14988014 - 14987959
Alignment:
Q  13 aatatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    |||||| |||||||||||| |||||||||| ||| ||||||| |||||||||||||    
T  14988014 aatataacattcttaaaagtaaatttgtttgagggtataactaaaataatgaaaaa 14987959  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 40155060 - 40155115
Alignment:
Q  13 aatatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    ||||||||||| |||||||||||||| ||||||| |||||||  ||||||||||||    
T  40155060 aatatagcatttttaaaagcaaatttatttaagggtataactagaataatgaaaaa 40155115  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 42040966 - 42040904
Alignment:
Q  21 attcttaaaag-caaatttgtttaaggatataactgaaataatgaaaaagtaaacccaaaaaa 82  Q
    ||||||||||| ||| ||||||||||| |||||||| |||||||||||| | |||||||||||    
T  42040966 attcttaaaagacaagtttgtttaagggtataactggaataatgaaaaactcaacccaaaaaa 42040904  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 13890240 - 13890199
Alignment:
Q  13 aatatagcattcttaaaagcaaatttgtttaaggatataact 54  Q
    |||||| ||||||||||||||| ||| |||||||||||||||    
T  13890240 aatataacattcttaaaagcaagtttatttaaggatataact 13890199  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 47356458 - 47356414
Alignment:
Q  24 cttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    ||||||||||||||||||||||   ||||||| ||||||||||||    
T  47356458 cttaaaagcaaatttgtttaagaggataactggaataatgaaaaa 47356414  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 37716132 - 37716186
Alignment:
Q  13 aatatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaa 67  Q
    |||||||||||| ||||| ||||||| ||||||| |||||||| |||||||||||    
T  37716132 aatatagcattcataaaaccaaatttatttaagggtataactggaataatgaaaa 37716186  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 41554921 - 41554990
Alignment:
Q  13 aatatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaagtaaacccaaaaaa 82  Q
    |||||| | ||||||||||||| ||||||||||| ||||||| ||| |||||||||  ||||| ||||||    
T  41554921 aatataactttcttaaaagcaactttgtttaagggtataactcaaacaatgaaaaatcaaaccaaaaaaa 41554990  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 13277957 - 13277902
Alignment:
Q  13 aatatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    |||||| |||| ||| | |||||||| ||||||||||||| |||||||||||||||    
T  13277957 aatataacattgttataggcaaatttatttaaggatataattgaaataatgaaaaa 13277902  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 6040684 - 6040641
Alignment:
Q  25 ttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||    
T  6040684 ttaaaaacaaatttgtttaagggtataacttaaataatgaaaaa 6040641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 13502901 - 13502955
Alignment:
Q  14 atatagcattcttaaaagcaaatttgtttaaggatataactgaaataatgaaaaa 68  Q
    ||||| ||||||||||||||||||||||||||  |||||||| ||| ||| ||||    
T  13502901 atataacattcttaaaagcaaatttgtttaagtgtataactgtaatcatgtaaaa 13502955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 7980513 - 7980473
Alignment:
Q  25 ttaaaagcaaatttgtttaaggatataactgaaataatgaa 65  Q
    |||||||||||||| ||||||| ||||| ||||||||||||    
T  7980513 ttaaaagcaaatttatttaagggtataattgaaataatgaa 7980473  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 53705 - 53668
Alignment:
Q  33 aaatttgtttaaggatataactgaaataatgaaaaagt 70  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  53705 aaatttgtttaaagatataattgaaataatgaaaaagt 53668  T

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