View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_23 (Length: 354)
Name: NF19418_low_23
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_23 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 11843034 - 11843382
Alignment:
| Q |
9 |
gattatactgatcaaacaagtaaataaatttttacaagtcaaactataggcagcagaagtaaaaaa-gaaggtggaagagtgagtcatacaaggtatgtg |
107 |
Q |
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| T |
11843034 |
gattatgctgatcaaacaagtaaataaatttttacaagtcaaactataggcagcagaagtaaaaaaagaaggtggaagagtgagtcatacaaggtatgtg |
11843133 |
T |
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| Q |
108 |
gggaaactttcgaggcaaaaaga-tagcacgaagagcaccactctgaatcttccaatcaattgggttgatgctagttgcttccaatttgagtaaaacttc |
206 |
Q |
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| T |
11843134 |
gggaaactttcgaggcaaaaagaatagcacgaagagcaccactctgaatcttccaatcaattgggttgatgctagttgcttccaatttgagtaaaacttc |
11843233 |
T |
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| Q |
207 |
gttagtctttggagttggtacaggaacttcagcatgctgtttt-aaaccaataattgaattgaattgaatcagaattagtgatgcaaatgcagatttgaa |
305 |
Q |
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| T |
11843234 |
gttagtctttggaattggtacaggaacttcagcatgctgttttaaaaccaataattgaattgaattgaatcagatttagtgatgcaaatgcagatttgaa |
11843333 |
T |
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| Q |
306 |
gaaaaagataatgaatctattgnnnnnnntgagaaatgggtcatgaatc |
354 |
Q |
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| T |
11843334 |
gaaaaagataatgaatctattgaaaaagatgagaaatgggtcatgaatc |
11843382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 86 - 270
Target Start/End: Original strand, 11802766 - 11802949
Alignment:
| Q |
86 |
agtgagtcatacaaggtatgtggggaaactttcgaggcaaaaagatagcacgaagagcaccactctgaatcttccaatcaattgggttgatgctagttgc |
185 |
Q |
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| T |
11802766 |
agtgagtcttacaaggtgtgtggggaaactttcgaggaaaaaatatagcacgaagaacaccagtctgaatcttccaatcagctgggttgatgcgaattgc |
11802865 |
T |
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| Q |
186 |
ttccaatttgagtaaaacttcgttagtctttggagttggtacaggaacttcagcatgctgttttaaaccaataattgaattgaat |
270 |
Q |
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| T |
11802866 |
ttccaatttgattaaaacttcattagtctttggagttggaataggaacttcaacatgctg-cttaaaccaataattgaattgaat |
11802949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 70 - 258
Target Start/End: Original strand, 11808730 - 11808916
Alignment:
| Q |
70 |
aaaaagaaggtggaagagtgagtcatacaaggtatgtggggaaactttcgaggcaaaaagatagcacgaagagcaccactctgaatcttccaatcaattg |
169 |
Q |
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| T |
11808730 |
aaaaagaaggtggattagtgagtcatacaaggtatatggggaaattttcgaggaaaatataaagcatgaagagcacccttctgaat--tccaatcaactg |
11808827 |
T |
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| Q |
170 |
ggttgatgctagttgcttccaatttgagtaaaacttcgttagtctttggagttggtacaggaacttcagcatgctgttttaaaccaata |
258 |
Q |
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| T |
11808828 |
ggttattgctagttgcttccaatttgattaaaacttaattggtctttggagttggaacagaaacttcaacatgctgcttaaaaccaata |
11808916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 11857137 - 11857251
Alignment:
| Q |
151 |
tgaatcttccaatcaattgggttgatgctagttgcttccaatttgagtaaaacttcgttagtctttggagttggtacaggaacttcagcatgctgtttta |
250 |
Q |
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| T |
11857137 |
tgaatcttccaatcaactgggttaatgcttgttgcttccaatttgattaaaacctcattggtctttggaattggaacaggaacttcaacatgctg-cata |
11857235 |
T |
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| Q |
251 |
aaccaataattgaatt |
266 |
Q |
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| T |
11857236 |
aaccaataattgaatt |
11857251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 11431452 - 11431546
Alignment:
| Q |
151 |
tgaatcttccaatcaattgggttgatgctagttgcttccaatttgagtaaaacttcgttagtctttggagttggtacaggaacttcagcatgctg |
245 |
Q |
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| T |
11431452 |
tgaatcttccaatcaactggattaatgctacttgcttccactttgattaaaacttcattggcctttggagttggaatatgaacttcaacatgctg |
11431546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 11564014 - 11563920
Alignment:
| Q |
151 |
tgaatcttccaatcaattgggttgatgctagttgcttccaatttgagtaaaacttcgttagtctttggagttggtacaggaacttcagcatgctg |
245 |
Q |
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| T |
11564014 |
tgaatcttccaatcaactggattaatgctacttgcttccactttgattaaaacttcattggcctttggagttggaatatgaacttcaacatgctg |
11563920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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