View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19418_low_26 (Length: 330)

Name: NF19418_low_26
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19418_low_26
NF19418_low_26
[»] chr4 (2 HSPs)
chr4 (1-308)||(26735069-26735376)
chr4 (1-308)||(26726755-26727062)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 26735376 - 26735069
Alignment:
Q  1 ttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcgtcgttagactcgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26735376 ttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcgtcgttagactcgt 26735277  T
Q  101 catgaatctaatctcatcagggattttcccagatatgttattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccctttaggaacctca 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26735276 catgaatctaatctcatcagggattttcccagatatgctattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccctttaggaacctca 26735177  T
Q  201 ccggtaagcatgtttcggctgaagtcaactgcagtcagtgaactacattgagtaaccgtctttggaattccaccggtgagattattgccacttatattga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  26735176 ccggtaagcatgtttcggctgaagtcaactgcagtcagtgaactacattgagtaaccgtctttggaattccaccagtgagattattgccacttatgttga 26735077  T
Q  301 ttctagtc 308  Q
    ||||||||    
T  26735076 ttctagtc 26735069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 26727062 - 26726755
Alignment:
Q  1 ttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcgtcgttagactcgt 100  Q
    |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  26727062 ttcccgcaaatgaacggtcgttgaagaccaaaaactgaccaccggtggggacaattccggtgaaattgttgtaagataaatccagcgtcgttagactcat 26726963  T
Q  101 catgaatctaatctcatcagggattttcccagatatgttattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccctttaggaacctca 200  Q
    |||||||||||| ||||  ||||||| ||| |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  26726962 catgaatctaatatcattggggatttgccccgatatgctattatgcgaaacattcaaaatgtttagcaccttcagattcttcatccctttaggaacctca 26726863  T
Q  201 ccggtaagcatgtttcggctgaagtcaactgcagtcagtgaactacattgagtaaccgtctttggaattccaccggtgagattattgccacttatattga 300  Q
    ||||||||||||||| ||||||||||||| || |||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |    
T  26726862 ccggtaagcatgtttaggctgaagtcaacggctgtcaatgtactacattgagtaaccgtctttggaattccaccagtgagattgttgccacttatgttaa 26726763  T
Q  301 ttctagtc 308  Q
    ||||||||    
T  26726762 ttctagtc 26726755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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