View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_28 (Length: 309)
Name: NF19418_low_28
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 2183646 - 2183927
Alignment:
| Q |
9 |
acatcatcatcacttataattctcacatcattttattagcaaattaaaatgaacacgttatagnnnnnnnnnnnnnnnnngatctttacaaagtgaaatt |
108 |
Q |
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| T |
2183646 |
acatcatcatcacttataattctcacatcattttattagcaaattaaaatgaacaccttatagaaaataaaaataaaaaagatctttacaaagtgaaatt |
2183745 |
T |
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| Q |
109 |
gttcgggagaaccagaattcgattcctaatgaaaacaattcttatcagatttaactttccttccaacaaaacttcggattactagagtccccttccccaa |
208 |
Q |
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| T |
2183746 |
gttcggaagaaccagaattcgattcctaatgaaaacattttttatcagatttaacttaccttccaacaaaacttcggattactagagtccccttccccaa |
2183845 |
T |
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| Q |
209 |
gacccggagcgttaacacaaaacaaacaagaaacataatcaatttatgaaaaccaaggctgagatttgcttggggtgcccag |
290 |
Q |
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| T |
2183846 |
gacccggagcgttaacacaaaacaaacaagaaacataatcaatttatgaaaaccaaggctgagatttgcttggggtgcccag |
2183927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 287
Target Start/End: Original strand, 2174832 - 2175016
Alignment:
| Q |
105 |
aattgttcgggagaaccagaattcgattcctaatgaaaacaattcttatcagatttaactttccttccaacaaaacttcggattactagagtccccttcc |
204 |
Q |
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| T |
2174832 |
aattgttcaggagaatctgagttcgattcctaa-gaaaacaattcttgtcatattaaacttacctcctaacaaaactccggattaatagggtcctcttcc |
2174930 |
T |
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| Q |
205 |
ccaagaccc--ggagcgttaacacaaaacaaacaagaaa-cataatcaatttatgaaaaccaaggctgagatttgcttggggtgcc |
287 |
Q |
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| T |
2174931 |
cctggacccccggggtgttaacacaaaacaaacaaaaaaacataatcaacttatgaaagccaaagctgacatttgcttagggtgcc |
2175016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 287
Target Start/End: Original strand, 2151184 - 2151328
Alignment:
| Q |
143 |
acaattcttatcagatttaactttccttccaacaaaacttcggattactagagtccccttccccaag-acccggagcgttaacacaaaacaaacaagaaa |
241 |
Q |
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|||||| || ||| ||||||||| ||| | ||||||||| ||||||||| | |||||||| || || ||||||||||||||||||||||||| || ||| |
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| T |
2151184 |
acaattattgtcatatttaacttacctcctaacaaaactccggattactcgggtccccttgccttaggacccggagcgttaacacaaaacaaagaaaaaa |
2151283 |
T |
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| Q |
242 |
cataatcaatttatgaaaaccaaggctgagatttgcttggggtgcc |
287 |
Q |
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| T |
2151284 |
-acaatcaacttatgaaagccaaggctgacatttgcttggggtgcc |
2151328 |
T |
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