View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19418_low_33 (Length: 279)
Name: NF19418_low_33
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 865857 - 865607
Alignment:
| Q |
16 |
ctcttttccaagacttccgatactaattccatgaccaggtccacaattaacattgtgcaccaatatattggaacatccagtttgtatagatacacaatca |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||| |
|
|
| T |
865857 |
ctcttttccgagacttccgatactaattccatgacctggtccacaattaacattgtgcaccaatatgttagaacaaccagtttgtatagacacacaatca |
865758 |
T |
|
| Q |
116 |
tctcctacatgatgaagaaatgatacatcatgaaatgtgttcaattcaattcttctaggaaactcatacacattttgtgaaattcttaccacaactaagt |
215 |
Q |
| |
|
|| ||||||||||||| || |||| ||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
865757 |
tcccctacatgatgaaaaagtgatgcattatgaaatgtgttcaattcaattcttctagaaaactcattcaaattttgtgaaattcttaccacaactaagt |
865658 |
T |
|
| Q |
216 |
gtgctactatagatgagcacatcttgagaattttgtaggtgaattccatct |
266 |
Q |
| |
|
||||| | | | |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
865657 |
gtgctgccagatatgaccacatcttgagaattttgtaggtgaattccatct |
865607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 27296047 - 27296148
Alignment:
| Q |
20 |
tttccaagacttccgatactaattccatgaccaggtccacaattaacattgtgcaccaatatattggaacatccagtttgtatagatacacaatcatctc |
119 |
Q |
| |
|
||||| |||| |||||| || |||||||| || |||||||| | |||||||| || ||| ||| || ||||||||||||||||| | ||||||||||| |
|
|
| T |
27296047 |
tttcctagacctccgatgctgattccatgccctggtccacagtcgacattgtgtacgtatacatttgagcatccagtttgtatagaaatacaatcatctc |
27296146 |
T |
|
| Q |
120 |
ct |
121 |
Q |
| |
|
|| |
|
|
| T |
27296147 |
ct |
27296148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 11532474 - 11532436
Alignment:
| Q |
23 |
ccaagacttccgatactaattccatgaccaggtccacaa |
61 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
11532474 |
ccaagacttccgacactaattccatgaccaggaccacaa |
11532436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 42844364 - 42844324
Alignment:
| Q |
29 |
cttccgatactaattccatgaccaggtccacaattaacatt |
69 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
42844364 |
cttccgacactaattccatgaccaggtccacaattcacatt |
42844324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 14738629 - 14738525
Alignment:
| Q |
17 |
tcttttccaagacttccgatactaattccatgaccaggtccacaattaacattgtgcaccaatatattggaacatccagtttgtatagatacacaatcat |
116 |
Q |
| |
|
|||||||| | |||||| || || |||||||| || || ||||| || |||||||| || ||| ||| || ||||||||||||||||| | ||||||| |
|
|
| T |
14738629 |
tcttttcctaaacttccaatgctgattccatgtcccggaccacagttgacattgtgtacatatacatttgagcatccagtttgtatagaaatgcaatcat |
14738530 |
T |
|
| Q |
117 |
ctcct |
121 |
Q |
| |
|
||||| |
|
|
| T |
14738529 |
ctcct |
14738525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 42943877 - 42943836
Alignment:
| Q |
20 |
tttccaagacttccgatactaattccatgaccaggtccacaa |
61 |
Q |
| |
|
|||||||||||||||| |||||||||||| || ||||||||| |
|
|
| T |
42943877 |
tttccaagacttccgacactaattccatgtcccggtccacaa |
42943836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University